Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2974 and Dsui_2975 are separated by 9 nucleotides Dsui_2975 and Dsui_2976 are separated by 164 nucleotides
Dsui_2974: Dsui_2974 - putative iron-regulated membrane protein, at 3,179,167 to 3,180,438
_2974
Dsui_2975: Dsui_2975 - TonB-dependent siderophore receptor, at 3,180,448 to 3,182,874
_2975
Dsui_2976: Dsui_2976 - Fe2+-dicitrate sensor, membrane component, at 3,183,039 to 3,184,058
_2976
Position (kb)
3180
3181
3182
3183 Strain fitness (log2 ratio)
-2
-1
0
1 at 3179.509 kb on - strand, within Dsui_2974 at 3179.509 kb on - strand, within Dsui_2974 at 3179.612 kb on - strand, within Dsui_2974 at 3179.625 kb on - strand, within Dsui_2974 at 3179.637 kb on + strand, within Dsui_2974 at 3179.734 kb on + strand at 3179.766 kb on + strand, within Dsui_2974 at 3179.856 kb on - strand, within Dsui_2974 at 3179.941 kb on + strand, within Dsui_2974 at 3179.941 kb on + strand, within Dsui_2974 at 3180.019 kb on - strand at 3180.019 kb on - strand at 3180.057 kb on + strand, within Dsui_2974 at 3180.057 kb on + strand at 3180.071 kb on - strand, within Dsui_2974 at 3180.221 kb on - strand, within Dsui_2974 at 3180.356 kb on + strand at 3180.364 kb on - strand at 3180.472 kb on + strand at 3180.627 kb on - strand at 3180.876 kb on - strand, within Dsui_2975 at 3180.881 kb on - strand at 3180.954 kb on + strand at 3181.058 kb on + strand at 3181.091 kb on + strand, within Dsui_2975 at 3181.249 kb on - strand, within Dsui_2975 at 3181.249 kb on - strand, within Dsui_2975 at 3181.269 kb on - strand, within Dsui_2975 at 3181.336 kb on - strand, within Dsui_2975 at 3181.362 kb on - strand, within Dsui_2975 at 3181.367 kb on - strand, within Dsui_2975 at 3181.428 kb on - strand, within Dsui_2975 at 3181.429 kb on - strand at 3181.563 kb on + strand at 3181.696 kb on + strand, within Dsui_2975 at 3181.800 kb on - strand, within Dsui_2975 at 3181.960 kb on - strand, within Dsui_2975 at 3181.962 kb on + strand at 3181.971 kb on - strand, within Dsui_2975 at 3181.976 kb on - strand, within Dsui_2975 at 3182.195 kb on - strand at 3182.225 kb on + strand at 3182.247 kb on + strand, within Dsui_2975 at 3182.254 kb on + strand at 3182.255 kb on - strand at 3182.341 kb on - strand, within Dsui_2975 at 3182.379 kb on - strand, within Dsui_2975 at 3182.542 kb on - strand, within Dsui_2975 at 3182.689 kb on - strand at 3182.902 kb on - strand at 3182.919 kb on - strand at 3182.929 kb on - strand at 3182.931 kb on + strand at 3182.939 kb on - strand at 3183.114 kb on - strand at 3183.184 kb on - strand, within Dsui_2976 at 3183.358 kb on + strand at 3183.364 kb on + strand at 3183.419 kb on - strand, within Dsui_2976 at 3183.503 kb on - strand, within Dsui_2976 at 3183.560 kb on - strand, within Dsui_2976 at 3183.584 kb on - strand, within Dsui_2976 at 3183.733 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 3,179,509 - Dsui_2974 0.27 +0.8 3,179,509 - Dsui_2974 0.27 -0.2 3,179,612 - Dsui_2974 0.35 -1.8 3,179,625 - Dsui_2974 0.36 +0.8 3,179,637 + Dsui_2974 0.37 +0.8 3,179,734 + +0.8 3,179,766 + Dsui_2974 0.47 +0.8 3,179,856 - Dsui_2974 0.54 -0.8 3,179,941 + Dsui_2974 0.61 +0.8 3,179,941 + Dsui_2974 0.61 -0.2 3,180,019 - +0.8 3,180,019 - +0.8 3,180,057 + Dsui_2974 0.70 -0.2 3,180,057 + +0.8 3,180,071 - Dsui_2974 0.71 -1.2 3,180,221 - Dsui_2974 0.83 -1.5 3,180,356 + +0.8 3,180,364 - -0.8 3,180,472 + +0.8 3,180,627 - +0.8 3,180,876 - Dsui_2975 0.18 -0.2 3,180,881 - +0.8 3,180,954 + +0.8 3,181,058 + +0.8 3,181,091 + Dsui_2975 0.26 -0.2 3,181,249 - Dsui_2975 0.33 +0.8 3,181,249 - Dsui_2975 0.33 -1.2 3,181,269 - Dsui_2975 0.34 +0.8 3,181,336 - Dsui_2975 0.37 -0.8 3,181,362 - Dsui_2975 0.38 -0.8 3,181,367 - Dsui_2975 0.38 -0.8 3,181,428 - Dsui_2975 0.40 -0.2 3,181,429 - +0.8 3,181,563 + -0.2 3,181,696 + Dsui_2975 0.51 -0.2 3,181,800 - Dsui_2975 0.56 -2.2 3,181,960 - Dsui_2975 0.62 +0.8 3,181,962 + +0.8 3,181,971 - Dsui_2975 0.63 -1.2 3,181,976 - Dsui_2975 0.63 +0.8 3,182,195 - +0.8 3,182,225 + +0.8 3,182,247 + Dsui_2975 0.74 -1.2 3,182,254 + +0.8 3,182,255 - +0.8 3,182,341 - Dsui_2975 0.78 -0.2 3,182,379 - Dsui_2975 0.80 -0.8 3,182,542 - Dsui_2975 0.86 -0.2 3,182,689 - -0.2 3,182,902 - -0.2 3,182,919 - -0.3 3,182,929 - +0.2 3,182,931 + -2.2 3,182,939 - -1.4 3,183,114 - -0.9 3,183,184 - Dsui_2976 0.14 -0.9 3,183,358 + +0.8 3,183,364 + +0.8 3,183,419 - Dsui_2976 0.37 -0.4 3,183,503 - Dsui_2976 0.45 -0.7 3,183,560 - Dsui_2976 0.51 -0.9 3,183,584 - Dsui_2976 0.53 +0.6 3,183,733 + -0.2
Or see this region's nucleotide sequence