Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2894 and Dsui_2895 overlap by 4 nucleotides Dsui_2895 and Dsui_2896 are separated by 6 nucleotides
Dsui_2894: Dsui_2894 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,094,276 to 3,096,444
_2894
Dsui_2895: Dsui_2895 - ABC-type uncharacterized transport system, periplasmic component, at 3,096,441 to 3,097,430
_2895
Dsui_2896: Dsui_2896 - outer membrane cobalamin receptor protein, at 3,097,437 to 3,099,677
_2896
Position (kb)
3096
3097
3098 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3095.518 kb on - strand, within Dsui_2894 at 3095.535 kb on - strand, within Dsui_2894 at 3095.535 kb on - strand, within Dsui_2894 at 3095.596 kb on - strand, within Dsui_2894 at 3095.738 kb on + strand at 3095.878 kb on + strand at 3095.896 kb on - strand, within Dsui_2894 at 3095.943 kb on + strand at 3095.945 kb on - strand, within Dsui_2894 at 3095.945 kb on - strand, within Dsui_2894 at 3096.049 kb on + strand at 3096.057 kb on - strand, within Dsui_2894 at 3096.201 kb on - strand, within Dsui_2894 at 3096.279 kb on - strand at 3096.347 kb on + strand at 3096.455 kb on - strand at 3096.460 kb on - strand at 3096.477 kb on - strand at 3096.566 kb on + strand at 3096.574 kb on - strand, within Dsui_2895 at 3096.651 kb on + strand at 3096.712 kb on - strand, within Dsui_2895 at 3096.862 kb on - strand, within Dsui_2895 at 3096.878 kb on - strand, within Dsui_2895 at 3096.964 kb on + strand, within Dsui_2895 at 3097.161 kb on + strand, within Dsui_2895 at 3097.339 kb on - strand at 3097.414 kb on + strand at 3097.529 kb on - strand at 3097.558 kb on - strand at 3097.596 kb on + strand at 3097.631 kb on - strand at 3097.631 kb on - strand at 3097.651 kb on + strand at 3097.669 kb on + strand at 3097.703 kb on + strand, within Dsui_2896 at 3097.718 kb on - strand, within Dsui_2896 at 3097.747 kb on - strand, within Dsui_2896 at 3097.790 kb on + strand, within Dsui_2896 at 3097.790 kb on + strand, within Dsui_2896 at 3097.793 kb on - strand, within Dsui_2896 at 3097.799 kb on + strand at 3097.853 kb on - strand, within Dsui_2896 at 3097.967 kb on + strand at 3097.975 kb on - strand, within Dsui_2896 at 3098.012 kb on + strand at 3098.099 kb on - strand, within Dsui_2896 at 3098.101 kb on - strand, within Dsui_2896 at 3098.110 kb on + strand, within Dsui_2896 at 3098.115 kb on - strand, within Dsui_2896 at 3098.118 kb on - strand, within Dsui_2896 at 3098.150 kb on + strand at 3098.150 kb on + strand, within Dsui_2896 at 3098.158 kb on - strand, within Dsui_2896 at 3098.158 kb on - strand, within Dsui_2896 at 3098.191 kb on - strand, within Dsui_2896 at 3098.348 kb on + strand, within Dsui_2896 at 3098.356 kb on - strand, within Dsui_2896 at 3098.356 kb on - strand, within Dsui_2896 at 3098.401 kb on + strand, within Dsui_2896 at 3098.403 kb on - strand, within Dsui_2896 at 3098.403 kb on - strand, within Dsui_2896
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 3,095,518 - Dsui_2894 0.57 +0.8 3,095,535 - Dsui_2894 0.58 -0.2 3,095,535 - Dsui_2894 0.58 +0.8 3,095,596 - Dsui_2894 0.61 +0.8 3,095,738 + +0.8 3,095,878 + +0.8 3,095,896 - Dsui_2894 0.75 -1.2 3,095,943 + -0.2 3,095,945 - Dsui_2894 0.77 -0.8 3,095,945 - Dsui_2894 0.77 +0.8 3,096,049 + -0.2 3,096,057 - Dsui_2894 0.82 +0.8 3,096,201 - Dsui_2894 0.89 -1.5 3,096,279 - -0.2 3,096,347 + -0.2 3,096,455 - -0.2 3,096,460 - +0.8 3,096,477 - +0.8 3,096,566 + -0.2 3,096,574 - Dsui_2895 0.13 -1.8 3,096,651 + -0.2 3,096,712 - Dsui_2895 0.27 -3.3 3,096,862 - Dsui_2895 0.43 +0.8 3,096,878 - Dsui_2895 0.44 +0.2 3,096,964 + Dsui_2895 0.53 -0.2 3,097,161 + Dsui_2895 0.73 -0.8 3,097,339 - -0.2 3,097,414 + -1.5 3,097,529 - +0.4 3,097,558 - -1.0 3,097,596 + -0.8 3,097,631 - +0.1 3,097,631 - +0.5 3,097,651 + -0.2 3,097,669 + +0.8 3,097,703 + Dsui_2896 0.12 -1.8 3,097,718 - Dsui_2896 0.13 +1.1 3,097,747 - Dsui_2896 0.14 -1.5 3,097,790 + Dsui_2896 0.16 -1.2 3,097,790 + Dsui_2896 0.16 -0.8 3,097,793 - Dsui_2896 0.16 -0.5 3,097,799 + +0.8 3,097,853 - Dsui_2896 0.19 -0.0 3,097,967 + +0.8 3,097,975 - Dsui_2896 0.24 -0.6 3,098,012 + -0.2 3,098,099 - Dsui_2896 0.30 -0.3 3,098,101 - Dsui_2896 0.30 +0.6 3,098,110 + Dsui_2896 0.30 -0.2 3,098,115 - Dsui_2896 0.30 -0.2 3,098,118 - Dsui_2896 0.30 -1.2 3,098,150 + -0.2 3,098,150 + Dsui_2896 0.32 -0.8 3,098,158 - Dsui_2896 0.32 +0.1 3,098,158 - Dsui_2896 0.32 -0.6 3,098,191 - Dsui_2896 0.34 -0.2 3,098,348 + Dsui_2896 0.41 -0.4 3,098,356 - Dsui_2896 0.41 -0.0 3,098,356 - Dsui_2896 0.41 +1.0 3,098,401 + Dsui_2896 0.43 -0.8 3,098,403 - Dsui_2896 0.43 -1.1 3,098,403 - Dsui_2896 0.43 +1.8
Or see this region's nucleotide sequence