Strain Fitness in Dechlorosoma suillum PS around Dsui_2831

Experiment: ALP with Cisplatin 0.0008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2830 and Dsui_2831 are separated by 27 nucleotidesDsui_2831 and Dsui_2832 are separated by 501 nucleotidesDsui_2832 and Dsui_2833 overlap by 25 nucleotides Dsui_2830: Dsui_2830 - adenine specific DNA methylase Mod, at 3,006,565 to 3,007,731 _2830 Dsui_2831: Dsui_2831 - hypothetical protein, at 3,007,759 to 3,008,490 _2831 Dsui_2832: Dsui_2832 - hypothetical protein, at 3,008,992 to 3,009,474 _2832 Dsui_2833: Dsui_2833 - putative transcriptional regulator, at 3,009,450 to 3,009,686 _2833 Position (kb) 3007 3008 3009Strain fitness (log2 ratio) -3 -2 -1 0 1at 3007.648 kb on + strandat 3007.648 kb on + strandat 3007.653 kb on - strandat 3007.671 kb on + strandat 3007.671 kb on + strandat 3007.671 kb on + strandat 3007.699 kb on + strandat 3007.699 kb on + strandat 3007.699 kb on + strandat 3007.699 kb on + strandat 3007.710 kb on + strandat 3007.771 kb on + strandat 3007.853 kb on + strand, within Dsui_2831at 3007.872 kb on + strand, within Dsui_2831at 3007.903 kb on - strand, within Dsui_2831at 3007.954 kb on - strand, within Dsui_2831at 3007.966 kb on + strand, within Dsui_2831at 3007.980 kb on + strand, within Dsui_2831at 3007.989 kb on + strand, within Dsui_2831at 3007.989 kb on + strand, within Dsui_2831at 3007.989 kb on + strand, within Dsui_2831at 3007.996 kb on + strand, within Dsui_2831at 3007.997 kb on - strand, within Dsui_2831at 3008.051 kb on + strand, within Dsui_2831at 3008.051 kb on + strand, within Dsui_2831at 3008.051 kb on + strand, within Dsui_2831at 3008.051 kb on + strand, within Dsui_2831at 3008.051 kb on + strand, within Dsui_2831at 3008.051 kb on + strand, within Dsui_2831at 3008.051 kb on + strand, within Dsui_2831at 3008.051 kb on + strand, within Dsui_2831at 3008.051 kb on + strand, within Dsui_2831at 3008.051 kb on + strand, within Dsui_2831at 3008.051 kb on + strand, within Dsui_2831at 3008.059 kb on - strand, within Dsui_2831at 3008.059 kb on - strand, within Dsui_2831at 3008.068 kb on - strand, within Dsui_2831at 3008.068 kb on - strand, within Dsui_2831at 3008.068 kb on - strand, within Dsui_2831at 3008.073 kb on - strand, within Dsui_2831at 3008.091 kb on + strand, within Dsui_2831at 3008.099 kb on - strand, within Dsui_2831at 3008.099 kb on - strand, within Dsui_2831at 3008.099 kb on - strand, within Dsui_2831at 3008.099 kb on - strand, within Dsui_2831at 3008.108 kb on + strand, within Dsui_2831at 3008.108 kb on + strand, within Dsui_2831at 3008.108 kb on + strand, within Dsui_2831at 3008.108 kb on + strand, within Dsui_2831at 3008.108 kb on + strand, within Dsui_2831at 3008.108 kb on + strand, within Dsui_2831at 3008.110 kb on + strand, within Dsui_2831at 3008.116 kb on - strand, within Dsui_2831at 3008.116 kb on - strand, within Dsui_2831at 3008.116 kb on - strandat 3008.116 kb on - strand, within Dsui_2831at 3008.116 kb on - strand, within Dsui_2831at 3008.116 kb on - strand, within Dsui_2831at 3008.116 kb on - strand, within Dsui_2831at 3008.116 kb on - strand, within Dsui_2831at 3008.116 kb on - strandat 3008.116 kb on - strand, within Dsui_2831at 3008.116 kb on - strand, within Dsui_2831at 3008.116 kb on - strand, within Dsui_2831at 3008.132 kb on + strand, within Dsui_2831at 3008.132 kb on + strand, within Dsui_2831at 3008.140 kb on - strand, within Dsui_2831at 3008.159 kb on - strand, within Dsui_2831at 3008.176 kb on + strand, within Dsui_2831at 3008.186 kb on + strand, within Dsui_2831at 3008.186 kb on + strand, within Dsui_2831at 3008.194 kb on - strand, within Dsui_2831at 3008.249 kb on + strand, within Dsui_2831at 3008.249 kb on + strand, within Dsui_2831at 3008.249 kb on + strand, within Dsui_2831at 3008.249 kb on + strand, within Dsui_2831at 3008.249 kb on + strand, within Dsui_2831at 3008.249 kb on + strand, within Dsui_2831at 3008.250 kb on - strand, within Dsui_2831at 3008.257 kb on - strand, within Dsui_2831at 3008.269 kb on + strand, within Dsui_2831at 3008.269 kb on + strand, within Dsui_2831at 3008.277 kb on - strand, within Dsui_2831at 3008.372 kb on + strand, within Dsui_2831at 3008.380 kb on - strand, within Dsui_2831at 3008.382 kb on + strand, within Dsui_2831at 3008.382 kb on + strand, within Dsui_2831at 3008.385 kb on - strand, within Dsui_2831at 3008.387 kb on + strand, within Dsui_2831at 3008.392 kb on + strand, within Dsui_2831at 3008.392 kb on + strand, within Dsui_2831at 3008.395 kb on - strand, within Dsui_2831at 3008.400 kb on - strand, within Dsui_2831at 3008.400 kb on - strand, within Dsui_2831at 3008.422 kb on + strandat 3008.424 kb on - strandat 3008.427 kb on + strandat 3008.427 kb on + strandat 3008.432 kb on + strandat 3008.432 kb on + strandat 3008.435 kb on - strandat 3008.437 kb on + strandat 3008.437 kb on + strandat 3008.445 kb on - strandat 3008.453 kb on - strandat 3008.471 kb on - strandat 3008.471 kb on - strandat 3008.552 kb on + strandat 3008.552 kb on + strandat 3008.562 kb on - strandat 3008.562 kb on - strandat 3008.571 kb on + strandat 3008.572 kb on - strandat 3008.579 kb on - strandat 3008.589 kb on - strandat 3008.604 kb on - strandat 3008.620 kb on + strandat 3008.670 kb on + strandat 3008.697 kb on + strandat 3008.710 kb on - strandat 3008.765 kb on - strandat 3008.794 kb on + strandat 3008.796 kb on - strandat 3008.862 kb on + strandat 3008.867 kb on + strandat 3008.880 kb on + strandat 3008.888 kb on - strandat 3008.897 kb on + strandat 3008.902 kb on + strandat 3008.934 kb on + strandat 3008.934 kb on - strandat 3008.942 kb on - strandat 3008.949 kb on + strandat 3008.983 kb on - strandat 3009.089 kb on + strand, within Dsui_2832at 3009.108 kb on + strand, within Dsui_2832at 3009.160 kb on + strand, within Dsui_2832at 3009.233 kb on + strand, within Dsui_2832at 3009.233 kb on + strand, within Dsui_2832at 3009.251 kb on + strand, within Dsui_2832at 3009.295 kb on + strand, within Dsui_2832at 3009.333 kb on - strand, within Dsui_2832at 3009.357 kb on + strand, within Dsui_2832at 3009.420 kb on + strand, within Dsui_2832at 3009.432 kb on - strandat 3009.434 kb on + strandat 3009.447 kb on + strandat 3009.447 kb on - strandat 3009.480 kb on + strand, within Dsui_2833

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml
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3,007,648 + +0.1
3,007,648 + -0.3
3,007,653 - +0.8
3,007,671 + -0.4
3,007,671 + +0.6
3,007,671 + +0.1
3,007,699 + +0.2
3,007,699 + -0.5
3,007,699 + -1.4
3,007,699 + -0.5
3,007,710 + -1.0
3,007,771 + +0.0
3,007,853 + Dsui_2831 0.13 +0.0
3,007,872 + Dsui_2831 0.15 -0.3
3,007,903 - Dsui_2831 0.20 -0.2
3,007,954 - Dsui_2831 0.27 -1.2
3,007,966 + Dsui_2831 0.28 -0.2
3,007,980 + Dsui_2831 0.30 +0.4
3,007,989 + Dsui_2831 0.31 +0.0
3,007,989 + Dsui_2831 0.31 +0.6
3,007,989 + Dsui_2831 0.31 -0.1
3,007,996 + Dsui_2831 0.32 +0.1
3,007,997 - Dsui_2831 0.33 -0.2
3,008,051 + Dsui_2831 0.40 -0.0
3,008,051 + Dsui_2831 0.40 +0.1
3,008,051 + Dsui_2831 0.40 -0.2
3,008,051 + Dsui_2831 0.40 +0.5
3,008,051 + Dsui_2831 0.40 +0.1
3,008,051 + Dsui_2831 0.40 +0.4
3,008,051 + Dsui_2831 0.40 +0.1
3,008,051 + Dsui_2831 0.40 -0.8
3,008,051 + Dsui_2831 0.40 -0.2
3,008,051 + Dsui_2831 0.40 -0.0
3,008,051 + Dsui_2831 0.40 +0.6
3,008,059 - Dsui_2831 0.41 -1.2
3,008,059 - Dsui_2831 0.41 +0.8
3,008,068 - Dsui_2831 0.42 +0.8
3,008,068 - Dsui_2831 0.42 -0.8
3,008,068 - Dsui_2831 0.42 -0.2
3,008,073 - Dsui_2831 0.43 +0.8
3,008,091 + Dsui_2831 0.45 -0.1
3,008,099 - Dsui_2831 0.46 -0.2
3,008,099 - Dsui_2831 0.46 +0.5
3,008,099 - Dsui_2831 0.46 +0.8
3,008,099 - Dsui_2831 0.46 +0.8
3,008,108 + Dsui_2831 0.48 +0.6
3,008,108 + Dsui_2831 0.48 -0.3
3,008,108 + Dsui_2831 0.48 +0.1
3,008,108 + Dsui_2831 0.48 +0.5
3,008,108 + Dsui_2831 0.48 -0.1
3,008,108 + Dsui_2831 0.48 -0.1
3,008,110 + Dsui_2831 0.48 -0.1
3,008,116 - Dsui_2831 0.49 -1.5
3,008,116 - Dsui_2831 0.49 +0.8
3,008,116 - -0.2
3,008,116 - Dsui_2831 0.49 -0.2
3,008,116 - Dsui_2831 0.49 +0.8
3,008,116 - Dsui_2831 0.49 -1.2
3,008,116 - Dsui_2831 0.49 +0.8
3,008,116 - Dsui_2831 0.49 -0.8
3,008,116 - +0.8
3,008,116 - Dsui_2831 0.49 -0.2
3,008,116 - Dsui_2831 0.49 +0.8
3,008,116 - Dsui_2831 0.49 -0.2
3,008,132 + Dsui_2831 0.51 +0.4
3,008,132 + Dsui_2831 0.51 -0.1
3,008,140 - Dsui_2831 0.52 +0.8
3,008,159 - Dsui_2831 0.55 +0.8
3,008,176 + Dsui_2831 0.57 +0.7
3,008,186 + Dsui_2831 0.58 +0.5
3,008,186 + Dsui_2831 0.58 +0.6
3,008,194 - Dsui_2831 0.59 -0.8
3,008,249 + Dsui_2831 0.67 +0.2
3,008,249 + Dsui_2831 0.67 -0.0
3,008,249 + Dsui_2831 0.67 -0.3
3,008,249 + Dsui_2831 0.67 -0.1
3,008,249 + Dsui_2831 0.67 +0.2
3,008,249 + Dsui_2831 0.67 -0.1
3,008,250 - Dsui_2831 0.67 +0.8
3,008,257 - Dsui_2831 0.68 -1.2
3,008,269 + Dsui_2831 0.70 +0.1
3,008,269 + Dsui_2831 0.70 -0.0
3,008,277 - Dsui_2831 0.71 -0.2
3,008,372 + Dsui_2831 0.84 +0.0
3,008,380 - Dsui_2831 0.85 -0.8
3,008,382 + Dsui_2831 0.85 +0.5
3,008,382 + Dsui_2831 0.85 -0.2
3,008,385 - Dsui_2831 0.86 +0.8
3,008,387 + Dsui_2831 0.86 +0.3
3,008,392 + Dsui_2831 0.86 +0.8
3,008,392 + Dsui_2831 0.86 +0.4
3,008,395 - Dsui_2831 0.87 +0.8
3,008,400 - Dsui_2831 0.88 -0.2
3,008,400 - Dsui_2831 0.88 +0.8
3,008,422 + -0.2
3,008,424 - -0.2
3,008,427 + +0.4
3,008,427 + -0.1
3,008,432 + +0.2
3,008,432 + -0.2
3,008,435 - +0.8
3,008,437 + +0.7
3,008,437 + -0.0
3,008,445 - +0.8
3,008,453 - -0.2
3,008,471 - +0.8
3,008,471 - -0.2
3,008,552 + -0.4
3,008,552 + -0.2
3,008,562 - +0.8
3,008,562 - +0.8
3,008,571 + +0.1
3,008,572 - +0.8
3,008,579 - +0.8
3,008,589 - +0.8
3,008,604 - +0.8
3,008,620 + -0.1
3,008,670 + +0.4
3,008,697 + +0.0
3,008,710 - +0.8
3,008,765 - +0.8
3,008,794 + -0.4
3,008,796 - +0.8
3,008,862 + +0.1
3,008,867 + +0.8
3,008,880 + +0.8
3,008,888 - -0.2
3,008,897 + -0.4
3,008,902 + -0.1
3,008,934 + -1.0
3,008,934 - +0.8
3,008,942 - -0.2
3,008,949 + +0.8
3,008,983 - -1.5
3,009,089 + Dsui_2832 0.20 -0.7
3,009,108 + Dsui_2832 0.24 -2.2
3,009,160 + Dsui_2832 0.35 -0.1
3,009,233 + Dsui_2832 0.50 -0.9
3,009,233 + Dsui_2832 0.50 -0.1
3,009,251 + Dsui_2832 0.54 -0.5
3,009,295 + Dsui_2832 0.63 -0.4
3,009,333 - Dsui_2832 0.71 -1.2
3,009,357 + Dsui_2832 0.76 -0.2
3,009,420 + Dsui_2832 0.89 -2.5
3,009,432 - -0.8
3,009,434 + -3.2
3,009,447 + -2.3
3,009,447 - -0.4
3,009,480 + Dsui_2833 0.13 -0.8

Or see this region's nucleotide sequence