Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2650 and Dsui_2651 are separated by 68 nucleotides Dsui_2651 and Dsui_2652 are separated by 16 nucleotides Dsui_2652 and Dsui_2653 are separated by 29 nucleotides
Dsui_2650: Dsui_2650 - TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component, at 2,806,466 to 2,807,458
_2650
Dsui_2651: Dsui_2651 - ankyrin repeat-containing protein, at 2,807,527 to 2,808,171
_2651
Dsui_2652: Dsui_2652 - hydrolase, TatD family, at 2,808,188 to 2,808,970
_2652
Dsui_2653: Dsui_2653 - Tfp pilus assembly protein PilZ, at 2,809,000 to 2,809,386
_2653
Position (kb)
2807
2808
2809 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2806.598 kb on + strand, within Dsui_2650 at 2806.606 kb on - strand, within Dsui_2650 at 2806.674 kb on - strand, within Dsui_2650 at 2806.735 kb on + strand, within Dsui_2650 at 2806.744 kb on + strand at 2806.744 kb on + strand at 2806.752 kb on - strand, within Dsui_2650 at 2806.762 kb on + strand, within Dsui_2650 at 2806.812 kb on + strand, within Dsui_2650 at 2806.889 kb on - strand, within Dsui_2650 at 2806.924 kb on + strand, within Dsui_2650 at 2806.924 kb on + strand, within Dsui_2650 at 2807.071 kb on - strand, within Dsui_2650 at 2807.071 kb on - strand, within Dsui_2650 at 2807.072 kb on - strand, within Dsui_2650 at 2807.106 kb on - strand, within Dsui_2650 at 2807.120 kb on + strand, within Dsui_2650 at 2807.356 kb on - strand, within Dsui_2650 at 2807.362 kb on - strand at 2807.425 kb on + strand at 2807.437 kb on + strand at 2807.468 kb on - strand at 2807.530 kb on + strand at 2807.530 kb on + strand at 2807.540 kb on + strand at 2807.604 kb on - strand, within Dsui_2651 at 2807.619 kb on + strand at 2807.637 kb on - strand at 2807.933 kb on - strand, within Dsui_2651 at 2808.088 kb on - strand at 2808.088 kb on - strand, within Dsui_2651 at 2808.089 kb on - strand at 2808.152 kb on + strand at 2808.256 kb on + strand at 2808.265 kb on + strand at 2808.349 kb on + strand, within Dsui_2652 at 2808.369 kb on + strand at 2808.493 kb on + strand at 2808.513 kb on - strand, within Dsui_2652 at 2808.527 kb on + strand, within Dsui_2652 at 2808.580 kb on + strand at 2808.580 kb on + strand at 2808.617 kb on - strand, within Dsui_2652 at 2808.622 kb on - strand, within Dsui_2652 at 2808.624 kb on + strand, within Dsui_2652 at 2808.765 kb on + strand, within Dsui_2652 at 2808.773 kb on - strand, within Dsui_2652 at 2808.795 kb on - strand, within Dsui_2652 at 2808.815 kb on + strand at 2808.816 kb on + strand at 2808.835 kb on - strand, within Dsui_2652 at 2808.855 kb on - strand, within Dsui_2652 at 2808.941 kb on + strand at 2809.037 kb on - strand at 2809.063 kb on - strand, within Dsui_2653 at 2809.108 kb on + strand, within Dsui_2653 at 2809.123 kb on - strand, within Dsui_2653 at 2809.131 kb on - strand, within Dsui_2653
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 2,806,598 + Dsui_2650 0.13 +0.8 2,806,606 - Dsui_2650 0.14 -0.1 2,806,674 - Dsui_2650 0.21 +0.1 2,806,735 + Dsui_2650 0.27 +0.1 2,806,744 + +0.8 2,806,744 + +0.8 2,806,752 - Dsui_2650 0.29 +0.3 2,806,762 + Dsui_2650 0.30 -1.2 2,806,812 + Dsui_2650 0.35 -1.2 2,806,889 - Dsui_2650 0.43 -0.3 2,806,924 + Dsui_2650 0.46 +0.8 2,806,924 + Dsui_2650 0.46 -0.8 2,807,071 - Dsui_2650 0.61 -0.5 2,807,071 - Dsui_2650 0.61 -0.9 2,807,072 - Dsui_2650 0.61 -0.0 2,807,106 - Dsui_2650 0.64 -0.6 2,807,120 + Dsui_2650 0.66 -2.8 2,807,356 - Dsui_2650 0.90 -0.3 2,807,362 - -0.8 2,807,425 + -0.2 2,807,437 + +0.8 2,807,468 - -0.6 2,807,530 + +0.8 2,807,530 + +0.8 2,807,540 + +0.8 2,807,604 - Dsui_2651 0.12 -2.0 2,807,619 + -1.2 2,807,637 - +0.8 2,807,933 - Dsui_2651 0.63 -0.8 2,808,088 - +0.8 2,808,088 - Dsui_2651 0.87 -3.3 2,808,089 - -0.2 2,808,152 + +0.8 2,808,256 + +0.8 2,808,265 + -1.2 2,808,349 + Dsui_2652 0.21 -1.2 2,808,369 + -0.2 2,808,493 + +0.8 2,808,513 - Dsui_2652 0.42 +0.3 2,808,527 + Dsui_2652 0.43 -0.8 2,808,580 + -0.2 2,808,580 + -0.2 2,808,617 - Dsui_2652 0.55 -0.1 2,808,622 - Dsui_2652 0.55 -0.5 2,808,624 + Dsui_2652 0.56 +0.8 2,808,765 + Dsui_2652 0.74 +0.8 2,808,773 - Dsui_2652 0.75 -0.7 2,808,795 - Dsui_2652 0.78 -0.1 2,808,815 + -0.8 2,808,816 + +0.8 2,808,835 - Dsui_2652 0.83 -0.4 2,808,855 - Dsui_2652 0.85 -0.2 2,808,941 + +0.8 2,809,037 - -0.5 2,809,063 - Dsui_2653 0.16 -0.2 2,809,108 + Dsui_2653 0.28 +0.8 2,809,123 - Dsui_2653 0.32 +0.4 2,809,131 - Dsui_2653 0.34 +0.1
Or see this region's nucleotide sequence