Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2547 and Dsui_2548 are separated by 58 nucleotides Dsui_2548 and Dsui_2549 are separated by 40 nucleotides Dsui_2549 and Dsui_2550 are separated by 134 nucleotides Dsui_2550 and Dsui_2551 are separated by 67 nucleotides
Dsui_2547: Dsui_2547 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,699,350 to 2,702,019
_2547
Dsui_2548: Dsui_2548 - hypothetical protein, at 2,702,078 to 2,702,518
_2548
Dsui_2549: Dsui_2549 - hypothetical protein, at 2,702,559 to 2,702,996
_2549
Dsui_2550: Dsui_2550 - Protein of unknown function (DUF2726), at 2,703,131 to 2,703,694
_2550
Dsui_2551: Dsui_2551 - Helix-destabilising protein, at 2,703,762 to 2,704,055
_2551
Position (kb)
2702
2703 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2701.561 kb on - strand, within Dsui_2547 at 2701.561 kb on - strand, within Dsui_2547 at 2701.657 kb on + strand, within Dsui_2547 at 2701.687 kb on + strand, within Dsui_2547 at 2701.758 kb on + strand at 2701.758 kb on + strand at 2701.766 kb on - strand at 2701.778 kb on - strand at 2701.901 kb on + strand at 2701.927 kb on + strand at 2701.935 kb on - strand at 2702.076 kb on - strand at 2702.206 kb on - strand, within Dsui_2548 at 2702.225 kb on - strand, within Dsui_2548 at 2702.252 kb on + strand, within Dsui_2548 at 2702.387 kb on + strand, within Dsui_2548 at 2702.445 kb on - strand, within Dsui_2548 at 2702.646 kb on + strand, within Dsui_2549 at 2702.749 kb on + strand, within Dsui_2549 at 2702.803 kb on - strand, within Dsui_2549 at 2702.804 kb on - strand, within Dsui_2549 at 2702.830 kb on + strand, within Dsui_2549 at 2702.830 kb on + strand at 2702.830 kb on + strand, within Dsui_2549 at 2702.835 kb on - strand, within Dsui_2549 at 2702.838 kb on - strand, within Dsui_2549 at 2702.838 kb on - strand, within Dsui_2549 at 2702.838 kb on - strand, within Dsui_2549 at 2702.838 kb on - strand, within Dsui_2549 at 2702.882 kb on - strand, within Dsui_2549 at 2702.915 kb on + strand, within Dsui_2549 at 2702.979 kb on + strand at 2703.100 kb on + strand at 2703.100 kb on - strand at 2703.104 kb on + strand at 2703.104 kb on + strand at 2703.104 kb on + strand at 2703.122 kb on - strand at 2703.158 kb on - strand at 2703.203 kb on - strand, within Dsui_2550 at 2703.222 kb on + strand, within Dsui_2550 at 2703.222 kb on + strand, within Dsui_2550 at 2703.230 kb on - strand, within Dsui_2550 at 2703.240 kb on + strand at 2703.248 kb on - strand, within Dsui_2550 at 2703.248 kb on - strand, within Dsui_2550 at 2703.294 kb on - strand, within Dsui_2550 at 2703.294 kb on - strand, within Dsui_2550 at 2703.313 kb on + strand, within Dsui_2550 at 2703.325 kb on + strand at 2703.325 kb on + strand at 2703.328 kb on - strand, within Dsui_2550 at 2703.328 kb on - strand, within Dsui_2550 at 2703.335 kb on + strand, within Dsui_2550 at 2703.338 kb on - strand, within Dsui_2550 at 2703.340 kb on + strand, within Dsui_2550 at 2703.343 kb on - strand, within Dsui_2550 at 2703.343 kb on - strand, within Dsui_2550 at 2703.348 kb on + strand at 2703.348 kb on - strand, within Dsui_2550 at 2703.399 kb on + strand at 2703.407 kb on - strand, within Dsui_2550 at 2703.455 kb on - strand, within Dsui_2550 at 2703.455 kb on - strand, within Dsui_2550 at 2703.465 kb on - strand, within Dsui_2550 at 2703.465 kb on - strand, within Dsui_2550 at 2703.465 kb on - strand, within Dsui_2550 at 2703.542 kb on - strand, within Dsui_2550 at 2703.605 kb on - strand, within Dsui_2550 at 2703.786 kb on + strand at 2703.794 kb on - strand, within Dsui_2551 at 2703.794 kb on - strand, within Dsui_2551 at 2703.794 kb on - strand, within Dsui_2551 at 2703.830 kb on + strand at 2703.838 kb on - strand, within Dsui_2551 at 2703.876 kb on - strand, within Dsui_2551 at 2703.946 kb on - strand, within Dsui_2551 at 2703.955 kb on + strand, within Dsui_2551 at 2703.955 kb on + strand, within Dsui_2551 at 2703.955 kb on + strand, within Dsui_2551 at 2703.963 kb on - strand, within Dsui_2551 at 2703.963 kb on - strand, within Dsui_2551
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 2,701,561 - Dsui_2547 0.83 -0.8 2,701,561 - Dsui_2547 0.83 -0.2 2,701,657 + Dsui_2547 0.86 -0.9 2,701,687 + Dsui_2547 0.88 -0.6 2,701,758 + -0.4 2,701,758 + +0.2 2,701,766 - +0.8 2,701,778 - +0.8 2,701,901 + -0.5 2,701,927 + -1.0 2,701,935 - -0.2 2,702,076 - +0.8 2,702,206 - Dsui_2548 0.29 +0.3 2,702,225 - Dsui_2548 0.33 -0.8 2,702,252 + Dsui_2548 0.39 -0.4 2,702,387 + Dsui_2548 0.70 -0.4 2,702,445 - Dsui_2548 0.83 -0.3 2,702,646 + Dsui_2549 0.20 -0.2 2,702,749 + Dsui_2549 0.43 -0.2 2,702,803 - Dsui_2549 0.56 -1.2 2,702,804 - Dsui_2549 0.56 -1.7 2,702,830 + Dsui_2549 0.62 -0.2 2,702,830 + +0.8 2,702,830 + Dsui_2549 0.62 +0.8 2,702,835 - Dsui_2549 0.63 -1.5 2,702,838 - Dsui_2549 0.64 -0.4 2,702,838 - Dsui_2549 0.64 -3.0 2,702,838 - Dsui_2549 0.64 -1.2 2,702,838 - Dsui_2549 0.64 +0.8 2,702,882 - Dsui_2549 0.74 -1.5 2,702,915 + Dsui_2549 0.81 +0.8 2,702,979 + -0.8 2,703,100 + -0.2 2,703,100 - +0.8 2,703,104 + +0.8 2,703,104 + +0.8 2,703,104 + -1.5 2,703,122 - -0.2 2,703,158 - +0.8 2,703,203 - Dsui_2550 0.13 +0.8 2,703,222 + Dsui_2550 0.16 -0.8 2,703,222 + Dsui_2550 0.16 +0.8 2,703,230 - Dsui_2550 0.18 -0.8 2,703,240 + -0.2 2,703,248 - Dsui_2550 0.21 -0.2 2,703,248 - Dsui_2550 0.21 +0.8 2,703,294 - Dsui_2550 0.29 -0.2 2,703,294 - Dsui_2550 0.29 +0.8 2,703,313 + Dsui_2550 0.32 +0.8 2,703,325 + -0.2 2,703,325 + +0.8 2,703,328 - Dsui_2550 0.35 -1.0 2,703,328 - Dsui_2550 0.35 +0.8 2,703,335 + Dsui_2550 0.36 +0.8 2,703,338 - Dsui_2550 0.37 +0.8 2,703,340 + Dsui_2550 0.37 -1.2 2,703,343 - Dsui_2550 0.38 -0.8 2,703,343 - Dsui_2550 0.38 -1.2 2,703,348 + +0.8 2,703,348 - Dsui_2550 0.38 -0.8 2,703,399 + +0.8 2,703,407 - Dsui_2550 0.49 -0.2 2,703,455 - Dsui_2550 0.57 +0.8 2,703,455 - Dsui_2550 0.57 +0.8 2,703,465 - Dsui_2550 0.59 -0.2 2,703,465 - Dsui_2550 0.59 -0.8 2,703,465 - Dsui_2550 0.59 -0.8 2,703,542 - Dsui_2550 0.73 +0.8 2,703,605 - Dsui_2550 0.84 +0.8 2,703,786 + -0.2 2,703,794 - Dsui_2551 0.11 -0.8 2,703,794 - Dsui_2551 0.11 +0.8 2,703,794 - Dsui_2551 0.11 +0.8 2,703,830 + +0.8 2,703,838 - Dsui_2551 0.26 -0.2 2,703,876 - Dsui_2551 0.39 +0.8 2,703,946 - Dsui_2551 0.63 -0.2 2,703,955 + Dsui_2551 0.66 +0.8 2,703,955 + Dsui_2551 0.66 +0.8 2,703,955 + Dsui_2551 0.66 -0.2 2,703,963 - Dsui_2551 0.68 +0.8 2,703,963 - Dsui_2551 0.68 +0.8
Or see this region's nucleotide sequence