Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2528 and Dsui_2529 are separated by 67 nucleotides Dsui_2529 and Dsui_2530 are separated by 55 nucleotides Dsui_2530 and Dsui_2531 overlap by 20 nucleotides Dsui_2531 and Dsui_2532 are separated by 93 nucleotides
Dsui_2528: Dsui_2528 - putative signal transduction protein, at 2,679,171 to 2,681,186
_2528
Dsui_2529: Dsui_2529 - outer membrane assembly lipoprotein YfiO, at 2,681,254 to 2,682,051
_2529
Dsui_2530: Dsui_2530 - pseudouridine synthase, RluA family, at 2,682,107 to 2,683,234
_2530
Dsui_2531: Dsui_2531 - uncharacterized protein, YfiH family, at 2,683,215 to 2,683,964
_2531
Dsui_2532: Dsui_2532 - tripartite ATP-independent periplasmic transporter solute receptor, DctP family, at 2,684,058 to 2,685,083
_2532
Position (kb)
2682
2683
2684 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2681.135 kb on + strand at 2681.152 kb on + strand at 2681.189 kb on - strand at 2681.239 kb on + strand at 2681.279 kb on + strand at 2681.284 kb on + strand at 2682.191 kb on - strand at 2682.365 kb on + strand, within Dsui_2530 at 2682.528 kb on + strand, within Dsui_2530 at 2682.536 kb on - strand at 2682.619 kb on + strand, within Dsui_2530 at 2682.627 kb on - strand, within Dsui_2530 at 2682.628 kb on - strand at 2682.657 kb on - strand at 2682.774 kb on + strand, within Dsui_2530 at 2682.984 kb on + strand, within Dsui_2530 at 2683.003 kb on - strand, within Dsui_2530 at 2683.026 kb on + strand, within Dsui_2530 at 2683.028 kb on + strand, within Dsui_2530 at 2683.084 kb on + strand, within Dsui_2530 at 2683.263 kb on + strand at 2683.266 kb on - strand at 2683.320 kb on + strand, within Dsui_2531 at 2683.451 kb on + strand, within Dsui_2531 at 2683.573 kb on + strand, within Dsui_2531 at 2683.667 kb on + strand, within Dsui_2531 at 2683.942 kb on + strand at 2683.958 kb on + strand at 2684.097 kb on - strand at 2684.230 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 2,681,135 + -1.2 2,681,152 + +0.8 2,681,189 - -0.8 2,681,239 + +0.8 2,681,279 + +0.8 2,681,284 + -1.8 2,682,191 - -0.2 2,682,365 + Dsui_2530 0.23 +0.8 2,682,528 + Dsui_2530 0.37 +0.6 2,682,536 - -0.8 2,682,619 + Dsui_2530 0.45 -0.0 2,682,627 - Dsui_2530 0.46 -0.8 2,682,628 - +0.8 2,682,657 - +0.8 2,682,774 + Dsui_2530 0.59 +0.5 2,682,984 + Dsui_2530 0.78 +1.4 2,683,003 - Dsui_2530 0.79 -1.5 2,683,026 + Dsui_2530 0.81 -2.8 2,683,028 + Dsui_2530 0.82 +0.3 2,683,084 + Dsui_2530 0.87 +0.1 2,683,263 + -1.8 2,683,266 - -0.2 2,683,320 + Dsui_2531 0.14 -1.3 2,683,451 + Dsui_2531 0.31 -0.6 2,683,573 + Dsui_2531 0.48 -1.0 2,683,667 + Dsui_2531 0.60 -0.3 2,683,942 + -1.5 2,683,958 + -1.5 2,684,097 - -0.8 2,684,230 - +0.8
Or see this region's nucleotide sequence