Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2471 and Dsui_2472 are separated by 81 nucleotides Dsui_2472 and Dsui_2473 are separated by 52 nucleotides Dsui_2473 and Dsui_2474 are separated by 16 nucleotides Dsui_2474 and Dsui_2475 are separated by 48 nucleotides Dsui_2475 and Dsui_2476 are separated by 138 nucleotides Dsui_2476 and Dsui_2477 are separated by 70 nucleotides Dsui_2477 and Dsui_2478 are separated by 17 nucleotides Dsui_2478 and Dsui_2479 overlap by 4 nucleotides Dsui_2479 and Dsui_2480 are separated by 6 nucleotides
Dsui_2471: Dsui_2471 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 2,628,210 to 2,628,785
_2471
Dsui_2472: Dsui_2472 - tRNA-Gly, at 2,628,867 to 2,628,942
_2472
Dsui_2473: Dsui_2473 - tRNA-Cys, at 2,628,995 to 2,629,068
_2473
Dsui_2474: Dsui_2474 - tRNA-Gly, at 2,629,085 to 2,629,160
_2474
Dsui_2475: Dsui_2475 - tRNA-Gly, at 2,629,209 to 2,629,284
_2475
Dsui_2476: Dsui_2476 - hypothetical protein, at 2,629,423 to 2,629,626
_2476
Dsui_2477: Dsui_2477 - tRNA-Leu, at 2,629,697 to 2,629,781
_2477
Dsui_2478: Dsui_2478 - hypothetical protein, at 2,629,799 to 2,630,239
_2478
Dsui_2479: Dsui_2479 - hypothetical protein, at 2,630,236 to 2,630,511
_2479
Dsui_2480: Dsui_2480 - nitrous oxidase accessory protein, at 2,630,518 to 2,631,753
_2480
Position (kb)
2629
2630 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2628.799 kb on + strand at 2628.800 kb on + strand at 2628.802 kb on - strand at 2628.807 kb on - strand at 2629.161 kb on + strand at 2629.175 kb on + strand at 2629.328 kb on + strand at 2629.394 kb on - strand at 2629.490 kb on + strand, within Dsui_2476 at 2629.653 kb on + strand at 2629.779 kb on + strand at 2629.814 kb on - strand at 2629.818 kb on + strand at 2629.852 kb on - strand, within Dsui_2478 at 2629.888 kb on - strand, within Dsui_2478 at 2629.902 kb on - strand, within Dsui_2478 at 2629.907 kb on - strand, within Dsui_2478 at 2629.944 kb on + strand, within Dsui_2478 at 2629.955 kb on + strand, within Dsui_2478 at 2630.021 kb on - strand, within Dsui_2478 at 2630.228 kb on + strand at 2630.253 kb on + strand at 2630.267 kb on - strand at 2630.293 kb on + strand, within Dsui_2479 at 2630.431 kb on - strand, within Dsui_2479 at 2630.446 kb on - strand, within Dsui_2479 at 2630.481 kb on + strand, within Dsui_2479 at 2630.505 kb on + strand at 2630.505 kb on + strand at 2630.513 kb on - strand at 2630.573 kb on - strand at 2630.665 kb on - strand, within Dsui_2480 at 2630.702 kb on + strand, within Dsui_2480 at 2630.746 kb on + strand, within Dsui_2480 at 2630.749 kb on - strand, within Dsui_2480
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 2,628,799 + -0.6 2,628,800 + -0.4 2,628,802 - -1.2 2,628,807 - -0.2 2,629,161 + -0.3 2,629,175 + -0.3 2,629,328 + -1.8 2,629,394 - -0.8 2,629,490 + Dsui_2476 0.33 -0.2 2,629,653 + +0.8 2,629,779 + -0.5 2,629,814 - -0.2 2,629,818 + -0.8 2,629,852 - Dsui_2478 0.12 -0.2 2,629,888 - Dsui_2478 0.20 -0.2 2,629,902 - Dsui_2478 0.23 -2.2 2,629,907 - Dsui_2478 0.24 +0.8 2,629,944 + Dsui_2478 0.33 -0.6 2,629,955 + Dsui_2478 0.35 -0.1 2,630,021 - Dsui_2478 0.50 -0.2 2,630,228 + -1.3 2,630,253 + -0.0 2,630,267 - +0.8 2,630,293 + Dsui_2479 0.21 -0.7 2,630,431 - Dsui_2479 0.71 -0.2 2,630,446 - Dsui_2479 0.76 -2.8 2,630,481 + Dsui_2479 0.89 -2.1 2,630,505 + -0.6 2,630,505 + +0.0 2,630,513 - -0.8 2,630,573 - +0.3 2,630,665 - Dsui_2480 0.12 -0.8 2,630,702 + Dsui_2480 0.15 -0.7 2,630,746 + Dsui_2480 0.18 -0.1 2,630,749 - Dsui_2480 0.19 -0.8
Or see this region's nucleotide sequence