Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2429 and Dsui_2430 are separated by 127 nucleotides Dsui_2430 and Dsui_2431 are separated by 54 nucleotides Dsui_2431 and Dsui_2432 are separated by 62 nucleotides
Dsui_2429: Dsui_2429 - putative permease, at 2,588,580 to 2,589,719
_2429
Dsui_2430: Dsui_2430 - tRNA-Asn, at 2,589,847 to 2,589,922
_2430
Dsui_2431: Dsui_2431 - tRNA-Asn, at 2,589,977 to 2,590,052
_2431
Dsui_2432: Dsui_2432 - hypothetical protein, at 2,590,115 to 2,591,863
_2432
Position (kb)
2589
2590 Strain fitness (log2 ratio)
-1
0
1
2 at 2588.964 kb on - strand at 2588.969 kb on + strand, within Dsui_2429 at 2588.984 kb on + strand at 2588.987 kb on - strand, within Dsui_2429 at 2589.034 kb on + strand, within Dsui_2429 at 2589.034 kb on - strand at 2589.062 kb on + strand at 2589.184 kb on + strand, within Dsui_2429 at 2589.184 kb on + strand, within Dsui_2429 at 2589.184 kb on + strand, within Dsui_2429 at 2589.192 kb on - strand at 2589.192 kb on - strand at 2589.244 kb on + strand at 2589.248 kb on + strand, within Dsui_2429 at 2589.252 kb on - strand at 2589.262 kb on + strand, within Dsui_2429 at 2589.270 kb on - strand, within Dsui_2429 at 2589.272 kb on + strand, within Dsui_2429 at 2589.290 kb on + strand, within Dsui_2429 at 2589.348 kb on + strand, within Dsui_2429 at 2589.371 kb on - strand, within Dsui_2429 at 2589.433 kb on - strand at 2589.513 kb on - strand at 2589.625 kb on + strand at 2589.664 kb on + strand at 2589.891 kb on - strand, within Dsui_2430 at 2589.938 kb on - strand at 2590.205 kb on + strand at 2590.205 kb on + strand at 2590.205 kb on + strand at 2590.440 kb on - strand at 2590.672 kb on - strand at 2590.706 kb on + strand, within Dsui_2432 at 2590.706 kb on + strand, within Dsui_2432 at 2590.712 kb on + strand, within Dsui_2432 at 2590.717 kb on + strand, within Dsui_2432 at 2590.735 kb on + strand, within Dsui_2432 at 2590.871 kb on + strand, within Dsui_2432 at 2590.879 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 2,588,964 - -0.1 2,588,969 + Dsui_2429 0.34 -0.7 2,588,984 + +0.9 2,588,987 - Dsui_2429 0.36 -1.1 2,589,034 + Dsui_2429 0.40 -0.7 2,589,034 - +0.9 2,589,062 + +0.9 2,589,184 + Dsui_2429 0.53 -0.7 2,589,184 + Dsui_2429 0.53 -0.1 2,589,184 + Dsui_2429 0.53 +0.9 2,589,192 - +0.9 2,589,192 - +0.9 2,589,244 + -0.7 2,589,248 + Dsui_2429 0.59 -0.7 2,589,252 - -0.1 2,589,262 + Dsui_2429 0.60 -0.1 2,589,270 - Dsui_2429 0.61 -0.1 2,589,272 + Dsui_2429 0.61 -0.7 2,589,290 + Dsui_2429 0.62 -1.1 2,589,348 + Dsui_2429 0.67 -0.1 2,589,371 - Dsui_2429 0.69 -0.1 2,589,433 - -0.1 2,589,513 - +2.5 2,589,625 + -0.7 2,589,664 + +0.9 2,589,891 - Dsui_2430 0.58 -0.3 2,589,938 - -0.3 2,590,205 + -0.1 2,590,205 + +0.9 2,590,205 + -0.1 2,590,440 - -0.7 2,590,672 - +0.9 2,590,706 + Dsui_2432 0.34 -0.7 2,590,706 + Dsui_2432 0.34 +0.9 2,590,712 + Dsui_2432 0.34 -0.7 2,590,717 + Dsui_2432 0.34 -0.7 2,590,735 + Dsui_2432 0.35 -0.1 2,590,871 + Dsui_2432 0.43 -0.7 2,590,879 - +0.9
Or see this region's nucleotide sequence