Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2411 and Dsui_2412 are separated by 125 nucleotides Dsui_2412 and Dsui_2413 are separated by 33 nucleotides
Dsui_2411: Dsui_2411 - alanine racemase, at 2,562,349 to 2,563,440
_2411
Dsui_2412: Dsui_2412 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,563,566 to 2,566,304
_2412
Dsui_2413: Dsui_2413 - DNA repair protein RadA, at 2,566,338 to 2,567,711
_2413
Position (kb)
2563
2564
2565
2566
2567 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2563.445 kb on + strand at 2563.622 kb on - strand at 2563.694 kb on + strand at 2563.923 kb on + strand, within Dsui_2412 at 2564.225 kb on + strand, within Dsui_2412 at 2564.281 kb on - strand, within Dsui_2412 at 2564.412 kb on + strand, within Dsui_2412 at 2564.415 kb on - strand at 2564.525 kb on + strand, within Dsui_2412 at 2564.674 kb on + strand, within Dsui_2412 at 2564.674 kb on + strand, within Dsui_2412 at 2564.674 kb on + strand, within Dsui_2412 at 2564.741 kb on + strand, within Dsui_2412 at 2564.749 kb on - strand at 2564.768 kb on + strand, within Dsui_2412 at 2564.776 kb on - strand at 2564.827 kb on + strand, within Dsui_2412 at 2564.827 kb on + strand, within Dsui_2412 at 2564.835 kb on - strand at 2565.018 kb on + strand, within Dsui_2412 at 2565.025 kb on + strand, within Dsui_2412 at 2565.040 kb on + strand, within Dsui_2412 at 2565.173 kb on + strand, within Dsui_2412 at 2565.206 kb on + strand, within Dsui_2412 at 2565.303 kb on + strand, within Dsui_2412 at 2565.352 kb on + strand, within Dsui_2412 at 2565.408 kb on + strand, within Dsui_2412 at 2565.424 kb on + strand at 2565.523 kb on + strand, within Dsui_2412 at 2565.597 kb on + strand at 2565.639 kb on + strand, within Dsui_2412 at 2565.670 kb on + strand, within Dsui_2412 at 2565.685 kb on + strand, within Dsui_2412 at 2565.686 kb on - strand at 2565.793 kb on + strand, within Dsui_2412 at 2565.815 kb on + strand, within Dsui_2412 at 2565.913 kb on + strand, within Dsui_2412 at 2565.913 kb on + strand, within Dsui_2412 at 2565.990 kb on - strand at 2566.170 kb on + strand at 2566.232 kb on + strand at 2566.326 kb on - strand at 2566.355 kb on + strand at 2566.436 kb on + strand at 2566.530 kb on + strand, within Dsui_2413 at 2566.558 kb on + strand, within Dsui_2413 at 2566.576 kb on - strand at 2566.591 kb on - strand at 2566.669 kb on + strand, within Dsui_2413 at 2566.908 kb on + strand, within Dsui_2413 at 2567.153 kb on + strand, within Dsui_2413 at 2567.200 kb on + strand, within Dsui_2413
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 2,563,445 + -0.3 2,563,622 - -1.1 2,563,694 + +0.9 2,563,923 + Dsui_2412 0.13 -0.2 2,564,225 + Dsui_2412 0.24 -2.1 2,564,281 - Dsui_2412 0.26 -0.1 2,564,412 + Dsui_2412 0.31 -2.8 2,564,415 - +0.9 2,564,525 + Dsui_2412 0.35 +0.9 2,564,674 + Dsui_2412 0.40 +0.5 2,564,674 + Dsui_2412 0.40 -0.1 2,564,674 + Dsui_2412 0.40 -0.7 2,564,741 + Dsui_2412 0.43 +0.7 2,564,749 - +0.9 2,564,768 + Dsui_2412 0.44 -0.1 2,564,776 - +0.9 2,564,827 + Dsui_2412 0.46 -0.1 2,564,827 + Dsui_2412 0.46 -1.5 2,564,835 - -0.1 2,565,018 + Dsui_2412 0.53 -0.1 2,565,025 + Dsui_2412 0.53 -0.1 2,565,040 + Dsui_2412 0.54 +0.9 2,565,173 + Dsui_2412 0.59 +1.7 2,565,206 + Dsui_2412 0.60 +0.9 2,565,303 + Dsui_2412 0.63 -0.7 2,565,352 + Dsui_2412 0.65 +0.9 2,565,408 + Dsui_2412 0.67 +0.2 2,565,424 + -0.1 2,565,523 + Dsui_2412 0.71 -1.4 2,565,597 + +0.9 2,565,639 + Dsui_2412 0.76 -0.4 2,565,670 + Dsui_2412 0.77 -0.1 2,565,685 + Dsui_2412 0.77 -1.7 2,565,686 - +0.9 2,565,793 + Dsui_2412 0.81 -0.1 2,565,815 + Dsui_2412 0.82 -0.1 2,565,913 + Dsui_2412 0.86 +2.5 2,565,913 + Dsui_2412 0.86 +0.9 2,565,990 - -0.1 2,566,170 + +0.9 2,566,232 + +0.9 2,566,326 - -0.7 2,566,355 + -1.7 2,566,436 + -1.4 2,566,530 + Dsui_2413 0.14 -1.6 2,566,558 + Dsui_2413 0.16 -1.6 2,566,576 - +0.9 2,566,591 - -1.1 2,566,669 + Dsui_2413 0.24 -2.0 2,566,908 + Dsui_2413 0.41 -2.9 2,567,153 + Dsui_2413 0.59 -1.3 2,567,200 + Dsui_2413 0.63 -0.6
Or see this region's nucleotide sequence