Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2195 and Dsui_2196 are separated by 125 nucleotides Dsui_2196 and Dsui_2197 are separated by 15 nucleotides
Dsui_2195: Dsui_2195 - trigger factor, at 2,330,596 to 2,331,900
_2195
Dsui_2196: Dsui_2196 - ATP-dependent Clp protease, proteolytic subunit ClpP, at 2,332,026 to 2,332,667
_2196
Dsui_2197: Dsui_2197 - endopeptidase Clp ATP-binding regulatory subunit ClpX, at 2,332,683 to 2,333,957
_2197
Position (kb)
2332
2333 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2331.069 kb on + strand, within Dsui_2195 at 2331.152 kb on + strand, within Dsui_2195 at 2331.275 kb on - strand at 2331.357 kb on + strand, within Dsui_2195 at 2331.427 kb on + strand, within Dsui_2195 at 2331.444 kb on + strand, within Dsui_2195 at 2331.477 kb on + strand, within Dsui_2195 at 2331.485 kb on - strand at 2331.485 kb on - strand, within Dsui_2195 at 2331.684 kb on + strand, within Dsui_2195 at 2331.697 kb on - strand at 2331.699 kb on + strand, within Dsui_2195 at 2331.699 kb on + strand, within Dsui_2195 at 2331.751 kb on + strand, within Dsui_2195 at 2331.808 kb on + strand at 2331.982 kb on + strand at 2331.990 kb on + strand at 2331.990 kb on + strand at 2331.990 kb on - strand at 2331.997 kb on - strand at 2332.062 kb on + strand at 2332.064 kb on - strand at 2332.070 kb on - strand at 2332.071 kb on - strand at 2332.143 kb on - strand, within Dsui_2196 at 2332.146 kb on + strand, within Dsui_2196 at 2332.158 kb on - strand, within Dsui_2196 at 2332.183 kb on + strand, within Dsui_2196 at 2332.385 kb on + strand, within Dsui_2196 at 2332.608 kb on + strand at 2332.629 kb on + strand at 2332.629 kb on + strand at 2332.637 kb on - strand at 2332.639 kb on + strand at 2332.639 kb on + strand at 2332.726 kb on - strand at 2332.750 kb on - strand at 2332.876 kb on - strand, within Dsui_2197 at 2332.903 kb on + strand, within Dsui_2197 at 2332.959 kb on + strand, within Dsui_2197 at 2332.967 kb on - strand, within Dsui_2197 at 2333.032 kb on - strand, within Dsui_2197 at 2333.037 kb on - strand, within Dsui_2197 at 2333.052 kb on - strand at 2333.080 kb on + strand, within Dsui_2197 at 2333.087 kb on - strand, within Dsui_2197 at 2333.122 kb on - strand, within Dsui_2197 at 2333.132 kb on + strand, within Dsui_2197 at 2333.281 kb on - strand, within Dsui_2197 at 2333.321 kb on + strand, within Dsui_2197 at 2333.321 kb on + strand, within Dsui_2197 at 2333.321 kb on + strand, within Dsui_2197 at 2333.328 kb on - strand, within Dsui_2197 at 2333.357 kb on + strand, within Dsui_2197 at 2333.446 kb on + strand, within Dsui_2197 at 2333.505 kb on - strand at 2333.510 kb on + strand, within Dsui_2197 at 2333.541 kb on + strand, within Dsui_2197 at 2333.541 kb on + strand, within Dsui_2197 at 2333.560 kb on + strand, within Dsui_2197 at 2333.636 kb on + strand, within Dsui_2197 at 2333.644 kb on - strand, within Dsui_2197
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 2,331,069 + Dsui_2195 0.36 -1.9 2,331,152 + Dsui_2195 0.43 -0.3 2,331,275 - +1.0 2,331,357 + Dsui_2195 0.58 -1.1 2,331,427 + Dsui_2195 0.64 -0.6 2,331,444 + Dsui_2195 0.65 -2.0 2,331,477 + Dsui_2195 0.68 -1.5 2,331,485 - +1.0 2,331,485 - Dsui_2195 0.68 -1.0 2,331,684 + Dsui_2195 0.83 -1.5 2,331,697 - +1.0 2,331,699 + Dsui_2195 0.85 -2.3 2,331,699 + Dsui_2195 0.85 -2.1 2,331,751 + Dsui_2195 0.89 -1.5 2,331,808 + -1.9 2,331,982 + +0.5 2,331,990 + +0.1 2,331,990 + +1.2 2,331,990 - +0.0 2,331,997 - +0.0 2,332,062 + -2.4 2,332,064 - +1.0 2,332,070 - +1.0 2,332,071 - +1.0 2,332,143 - Dsui_2196 0.18 +0.0 2,332,146 + Dsui_2196 0.19 -4.3 2,332,158 - Dsui_2196 0.21 -1.0 2,332,183 + Dsui_2196 0.24 -3.7 2,332,385 + Dsui_2196 0.56 -4.1 2,332,608 + -5.2 2,332,629 + -3.2 2,332,629 + -4.5 2,332,637 - +1.0 2,332,639 + -0.5 2,332,639 + -0.8 2,332,726 - +1.0 2,332,750 - -1.0 2,332,876 - Dsui_2197 0.15 +1.0 2,332,903 + Dsui_2197 0.17 -2.3 2,332,959 + Dsui_2197 0.22 -2.4 2,332,967 - Dsui_2197 0.22 +1.0 2,333,032 - Dsui_2197 0.27 +1.0 2,333,037 - Dsui_2197 0.28 +1.0 2,333,052 - +1.0 2,333,080 + Dsui_2197 0.31 -1.6 2,333,087 - Dsui_2197 0.32 -1.5 2,333,122 - Dsui_2197 0.34 +1.0 2,333,132 + Dsui_2197 0.35 -1.0 2,333,281 - Dsui_2197 0.47 +0.0 2,333,321 + Dsui_2197 0.50 -1.0 2,333,321 + Dsui_2197 0.50 -1.8 2,333,321 + Dsui_2197 0.50 -1.9 2,333,328 - Dsui_2197 0.51 +1.0 2,333,357 + Dsui_2197 0.53 -1.8 2,333,446 + Dsui_2197 0.60 -1.3 2,333,505 - +1.0 2,333,510 + Dsui_2197 0.65 -1.8 2,333,541 + Dsui_2197 0.67 -2.0 2,333,541 + Dsui_2197 0.67 -2.2 2,333,560 + Dsui_2197 0.69 -0.9 2,333,636 + Dsui_2197 0.75 -0.7 2,333,644 - Dsui_2197 0.75 -1.8
Or see this region's nucleotide sequence