Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2182 and Dsui_2183 are separated by 240 nucleotides Dsui_2183 and Dsui_2184 are separated by 114 nucleotides Dsui_2184 and Dsui_2185 are separated by 71 nucleotides
Dsui_2182: Dsui_2182 - arabinose efflux permease family protein, at 2,317,202 to 2,318,506
_2182
Dsui_2183: Dsui_2183 - aldose 1-epimerase-like enzyme, at 2,318,747 to 2,319,619
_2183
Dsui_2184: Dsui_2184 - hypothetical protein, at 2,319,734 to 2,320,282
_2184
Dsui_2185: Dsui_2185 - DNA-3-methyladenine glycosylase I, at 2,320,354 to 2,320,926
_2185
Position (kb)
2318
2319
2320 Strain fitness (log2 ratio)
-1
0
1
2 at 2317.957 kb on - strand at 2318.032 kb on + strand, within Dsui_2182 at 2318.042 kb on - strand at 2318.084 kb on - strand at 2318.156 kb on + strand, within Dsui_2182 at 2318.284 kb on - strand at 2318.595 kb on + strand at 2318.605 kb on + strand at 2318.768 kb on + strand at 2318.823 kb on + strand at 2318.948 kb on + strand at 2319.343 kb on + strand at 2319.369 kb on - strand, within Dsui_2183 at 2319.402 kb on - strand, within Dsui_2183 at 2319.564 kb on - strand at 2319.874 kb on + strand at 2319.977 kb on + strand, within Dsui_2184 at 2320.260 kb on - strand at 2320.299 kb on - strand at 2320.402 kb on + strand at 2320.425 kb on + strand, within Dsui_2185 at 2320.477 kb on - strand at 2320.619 kb on - strand, within Dsui_2185
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 2,317,957 - +0.1 2,318,032 + Dsui_2182 0.64 -0.9 2,318,042 - +0.1 2,318,084 - +0.1 2,318,156 + Dsui_2182 0.73 -1.3 2,318,284 - +1.1 2,318,595 + +1.1 2,318,605 + +1.1 2,318,768 + -0.5 2,318,823 + +1.1 2,318,948 + -1.3 2,319,343 + +1.1 2,319,369 - Dsui_2183 0.71 -0.5 2,319,402 - Dsui_2183 0.75 -1.0 2,319,564 - +2.1 2,319,874 + +0.1 2,319,977 + Dsui_2184 0.44 -1.7 2,320,260 - +0.1 2,320,299 - -1.5 2,320,402 + +1.1 2,320,425 + Dsui_2185 0.12 +0.1 2,320,477 - +0.1 2,320,619 - Dsui_2185 0.46 -0.5
Or see this region's nucleotide sequence