Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2107 and Dsui_2108 are separated by 25 nucleotides Dsui_2108 and Dsui_2110 are separated by 542 nucleotides
Dsui_2107: Dsui_2107 - hypothetical protein, at 2,230,445 to 2,231,428
_2107
Dsui_2108: Dsui_2108 - superfamily II helicase, at 2,231,454 to 2,234,183
_2108
Dsui_2110: Dsui_2110 - transposase, at 2,234,726 to 2,235,715
_2110
Position (kb)
2231
2232
2233
2234
2235 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2230.460 kb on - strand at 2230.460 kb on - strand at 2230.460 kb on - strand at 2230.460 kb on - strand at 2230.460 kb on - strand at 2230.602 kb on - strand, within Dsui_2107 at 2230.621 kb on + strand at 2230.657 kb on - strand, within Dsui_2107 at 2230.706 kb on - strand, within Dsui_2107 at 2230.710 kb on - strand, within Dsui_2107 at 2230.766 kb on - strand, within Dsui_2107 at 2230.813 kb on - strand, within Dsui_2107 at 2230.875 kb on - strand, within Dsui_2107 at 2230.890 kb on - strand, within Dsui_2107 at 2230.913 kb on + strand, within Dsui_2107 at 2230.957 kb on - strand, within Dsui_2107 at 2230.989 kb on + strand, within Dsui_2107 at 2230.989 kb on + strand at 2230.997 kb on - strand, within Dsui_2107 at 2231.008 kb on + strand at 2231.132 kb on - strand, within Dsui_2107 at 2231.139 kb on - strand, within Dsui_2107 at 2231.163 kb on - strand, within Dsui_2107 at 2231.192 kb on - strand, within Dsui_2107 at 2231.238 kb on - strand, within Dsui_2107 at 2231.248 kb on - strand, within Dsui_2107 at 2231.268 kb on - strand, within Dsui_2107 at 2231.297 kb on - strand, within Dsui_2107 at 2231.297 kb on - strand, within Dsui_2107 at 2231.297 kb on - strand, within Dsui_2107 at 2231.297 kb on - strand, within Dsui_2107 at 2231.297 kb on - strand, within Dsui_2107 at 2231.310 kb on - strand, within Dsui_2107 at 2231.371 kb on - strand at 2231.381 kb on + strand at 2231.389 kb on - strand at 2231.389 kb on - strand at 2231.392 kb on + strand at 2231.476 kb on - strand at 2231.512 kb on - strand at 2231.589 kb on + strand at 2231.600 kb on + strand at 2231.661 kb on - strand at 2231.848 kb on + strand, within Dsui_2108 at 2231.865 kb on - strand, within Dsui_2108 at 2231.964 kb on - strand, within Dsui_2108 at 2232.011 kb on - strand, within Dsui_2108 at 2232.013 kb on + strand, within Dsui_2108 at 2232.127 kb on - strand at 2232.476 kb on + strand, within Dsui_2108 at 2232.532 kb on + strand, within Dsui_2108 at 2232.532 kb on + strand, within Dsui_2108 at 2232.540 kb on - strand, within Dsui_2108 at 2232.540 kb on - strand, within Dsui_2108 at 2232.559 kb on + strand, within Dsui_2108 at 2232.564 kb on + strand, within Dsui_2108 at 2232.602 kb on + strand, within Dsui_2108 at 2232.681 kb on + strand, within Dsui_2108 at 2232.684 kb on - strand, within Dsui_2108 at 2232.725 kb on + strand, within Dsui_2108 at 2232.819 kb on - strand, within Dsui_2108 at 2232.853 kb on - strand, within Dsui_2108 at 2232.855 kb on + strand, within Dsui_2108 at 2232.863 kb on - strand, within Dsui_2108 at 2232.864 kb on - strand, within Dsui_2108 at 2232.866 kb on + strand, within Dsui_2108 at 2232.874 kb on - strand, within Dsui_2108 at 2232.936 kb on - strand, within Dsui_2108 at 2233.063 kb on - strand, within Dsui_2108 at 2233.283 kb on - strand, within Dsui_2108 at 2233.423 kb on - strand, within Dsui_2108 at 2233.464 kb on - strand, within Dsui_2108 at 2233.530 kb on + strand, within Dsui_2108 at 2233.593 kb on + strand, within Dsui_2108 at 2233.681 kb on - strand, within Dsui_2108 at 2233.686 kb on + strand, within Dsui_2108 at 2233.754 kb on + strand, within Dsui_2108 at 2233.773 kb on - strand, within Dsui_2108 at 2233.780 kb on + strand, within Dsui_2108 at 2233.950 kb on - strand at 2234.038 kb on - strand at 2234.129 kb on - strand at 2234.168 kb on + strand at 2234.216 kb on - strand at 2234.348 kb on - strand at 2234.386 kb on + strand at 2234.439 kb on + strand at 2234.452 kb on + strand at 2234.499 kb on - strand at 2234.501 kb on + strand at 2234.547 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 2,230,460 - +1.1 2,230,460 - +0.5 2,230,460 - -0.9 2,230,460 - -1.6 2,230,460 - +1.1 2,230,602 - Dsui_2107 0.16 -0.7 2,230,621 + +1.1 2,230,657 - Dsui_2107 0.22 +0.5 2,230,706 - Dsui_2107 0.27 -0.2 2,230,710 - Dsui_2107 0.27 +0.1 2,230,766 - Dsui_2107 0.33 +0.7 2,230,813 - Dsui_2107 0.37 +1.1 2,230,875 - Dsui_2107 0.44 -0.9 2,230,890 - Dsui_2107 0.45 +1.1 2,230,913 + Dsui_2107 0.48 +0.5 2,230,957 - Dsui_2107 0.52 -0.9 2,230,989 + Dsui_2107 0.55 +1.1 2,230,989 + +1.1 2,230,997 - Dsui_2107 0.56 +0.1 2,231,008 + +1.1 2,231,132 - Dsui_2107 0.70 -0.5 2,231,139 - Dsui_2107 0.71 -1.2 2,231,163 - Dsui_2107 0.73 +0.1 2,231,192 - Dsui_2107 0.76 +1.1 2,231,238 - Dsui_2107 0.81 +0.1 2,231,248 - Dsui_2107 0.82 -0.5 2,231,268 - Dsui_2107 0.84 -1.5 2,231,297 - Dsui_2107 0.87 -0.9 2,231,297 - Dsui_2107 0.87 +1.1 2,231,297 - Dsui_2107 0.87 +0.1 2,231,297 - Dsui_2107 0.87 +1.1 2,231,297 - Dsui_2107 0.87 +1.1 2,231,310 - Dsui_2107 0.88 +1.1 2,231,371 - +0.1 2,231,381 + +1.1 2,231,389 - +1.1 2,231,389 - +1.1 2,231,392 + +1.1 2,231,476 - -1.2 2,231,512 - -1.7 2,231,589 + +1.1 2,231,600 + -0.5 2,231,661 - -0.5 2,231,848 + Dsui_2108 0.14 +0.3 2,231,865 - Dsui_2108 0.15 +1.1 2,231,964 - Dsui_2108 0.19 +0.1 2,232,011 - Dsui_2108 0.20 +1.1 2,232,013 + Dsui_2108 0.20 -0.2 2,232,127 - +1.1 2,232,476 + Dsui_2108 0.37 +1.1 2,232,532 + Dsui_2108 0.39 +2.7 2,232,532 + Dsui_2108 0.39 +1.1 2,232,540 - Dsui_2108 0.40 +0.1 2,232,540 - Dsui_2108 0.40 -0.9 2,232,559 + Dsui_2108 0.40 +0.1 2,232,564 + Dsui_2108 0.41 +1.1 2,232,602 + Dsui_2108 0.42 +1.1 2,232,681 + Dsui_2108 0.45 +1.1 2,232,684 - Dsui_2108 0.45 +0.1 2,232,725 + Dsui_2108 0.47 -1.2 2,232,819 - Dsui_2108 0.50 +0.5 2,232,853 - Dsui_2108 0.51 +0.1 2,232,855 + Dsui_2108 0.51 +1.1 2,232,863 - Dsui_2108 0.52 +1.1 2,232,864 - Dsui_2108 0.52 +0.1 2,232,866 + Dsui_2108 0.52 -1.2 2,232,874 - Dsui_2108 0.52 +1.1 2,232,936 - Dsui_2108 0.54 -0.9 2,233,063 - Dsui_2108 0.59 -2.1 2,233,283 - Dsui_2108 0.67 +1.1 2,233,423 - Dsui_2108 0.72 -0.5 2,233,464 - Dsui_2108 0.74 -0.5 2,233,530 + Dsui_2108 0.76 -1.2 2,233,593 + Dsui_2108 0.78 +0.0 2,233,681 - Dsui_2108 0.82 -0.5 2,233,686 + Dsui_2108 0.82 +0.4 2,233,754 + Dsui_2108 0.84 +0.2 2,233,773 - Dsui_2108 0.85 +0.1 2,233,780 + Dsui_2108 0.85 -0.2 2,233,950 - -2.1 2,234,038 - +1.1 2,234,129 - -1.9 2,234,168 + -0.5 2,234,216 - -0.0 2,234,348 - -0.9 2,234,386 + -1.5 2,234,439 + +0.1 2,234,452 + -0.9 2,234,499 - +1.1 2,234,501 + -1.7 2,234,547 + +2.1
Or see this region's nucleotide sequence