Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2088 and Dsui_2089 are separated by 102 nucleotides Dsui_2089 and Dsui_2090 are separated by 133 nucleotides Dsui_2090 and Dsui_2091 overlap by 4 nucleotides Dsui_2091 and Dsui_2092 overlap by 37 nucleotides
Dsui_2088: Dsui_2088 - cytochrome c, at 2,210,365 to 2,211,318
_2088
Dsui_2089: Dsui_2089 - dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein, at 2,211,421 to 2,212,176
_2089
Dsui_2090: Dsui_2090 - transcriptional regulator, at 2,212,310 to 2,213,251
_2090
Dsui_2091: Dsui_2091 - hypothetical protein, at 2,213,248 to 2,213,385
_2091
Dsui_2092: Dsui_2092 - hypothetical protein, at 2,213,349 to 2,214,350
_2092
Position (kb)
2212
2213
2214 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2211.364 kb on - strand at 2211.364 kb on - strand at 2211.393 kb on + strand at 2211.532 kb on + strand at 2211.764 kb on - strand at 2211.825 kb on + strand at 2212.184 kb on - strand at 2212.185 kb on + strand at 2212.308 kb on + strand at 2212.308 kb on + strand at 2212.308 kb on + strand at 2212.318 kb on + strand at 2212.326 kb on - strand at 2212.326 kb on - strand at 2212.362 kb on + strand at 2212.394 kb on + strand at 2212.571 kb on + strand, within Dsui_2090 at 2212.589 kb on - strand, within Dsui_2090 at 2212.628 kb on + strand, within Dsui_2090 at 2212.684 kb on + strand, within Dsui_2090 at 2212.887 kb on + strand, within Dsui_2090 at 2212.932 kb on - strand at 2213.380 kb on - strand at 2213.456 kb on - strand, within Dsui_2092 at 2213.470 kb on + strand, within Dsui_2092 at 2213.579 kb on + strand at 2213.712 kb on - strand at 2213.727 kb on - strand at 2214.073 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 2,211,364 - +1.1 2,211,364 - -0.5 2,211,393 + +0.1 2,211,532 + -0.5 2,211,764 - +0.1 2,211,825 + +1.1 2,212,184 - +1.1 2,212,185 + +1.1 2,212,308 + -0.5 2,212,308 + +0.1 2,212,308 + -1.5 2,212,318 + -0.9 2,212,326 - +1.1 2,212,326 - +1.1 2,212,362 + -0.6 2,212,394 + -1.2 2,212,571 + Dsui_2090 0.28 +1.1 2,212,589 - Dsui_2090 0.30 -0.5 2,212,628 + Dsui_2090 0.34 +3.1 2,212,684 + Dsui_2090 0.40 +0.4 2,212,887 + Dsui_2090 0.61 +0.1 2,212,932 - +0.1 2,213,380 - +1.1 2,213,456 - Dsui_2092 0.11 +1.1 2,213,470 + Dsui_2092 0.12 -0.9 2,213,579 + +1.1 2,213,712 - -0.5 2,213,727 - +1.1 2,214,073 + -0.5
Or see this region's nucleotide sequence