Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2004 and Dsui_2005 overlap by 4 nucleotides Dsui_2005 and Dsui_2006 are separated by 13 nucleotides
Dsui_2004: Dsui_2004 - putative signal-transduction protein containing cAMP-binding and CBS domains, at 2,112,211 to 2,114,121
_2004
Dsui_2005: Dsui_2005 - DNA polymerase III epsilon subunit-like 3'-5' exonuclease, at 2,114,118 to 2,114,831
_2005
Dsui_2006: Dsui_2006 - putative sodium:solute symporter, VC_2705 subfamily, at 2,114,845 to 2,116,887
_2006
Position (kb)
2114
2115 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2113.196 kb on + strand, within Dsui_2004 at 2113.417 kb on + strand, within Dsui_2004 at 2113.483 kb on - strand, within Dsui_2004 at 2113.509 kb on + strand, within Dsui_2004 at 2113.556 kb on + strand, within Dsui_2004 at 2113.812 kb on + strand, within Dsui_2004 at 2113.870 kb on + strand, within Dsui_2004 at 2114.029 kb on - strand at 2114.246 kb on - strand at 2114.262 kb on + strand at 2114.443 kb on + strand, within Dsui_2005 at 2114.455 kb on + strand, within Dsui_2005 at 2114.536 kb on - strand, within Dsui_2005 at 2114.584 kb on + strand, within Dsui_2005 at 2114.594 kb on + strand, within Dsui_2005 at 2114.613 kb on - strand, within Dsui_2005 at 2114.613 kb on - strand at 2114.698 kb on - strand, within Dsui_2005 at 2114.892 kb on + strand at 2114.934 kb on - strand at 2114.942 kb on + strand at 2115.081 kb on + strand, within Dsui_2006 at 2115.146 kb on - strand, within Dsui_2006 at 2115.164 kb on + strand at 2115.549 kb on + strand, within Dsui_2006 at 2115.577 kb on + strand at 2115.680 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 2,113,196 + Dsui_2004 0.52 -0.9 2,113,417 + Dsui_2004 0.63 +0.1 2,113,483 - Dsui_2004 0.67 +0.1 2,113,509 + Dsui_2004 0.68 +1.1 2,113,556 + Dsui_2004 0.70 -0.9 2,113,812 + Dsui_2004 0.84 -1.5 2,113,870 + Dsui_2004 0.87 -0.5 2,114,029 - +1.1 2,114,246 - +0.1 2,114,262 + +1.1 2,114,443 + Dsui_2005 0.46 +0.1 2,114,455 + Dsui_2005 0.47 +1.1 2,114,536 - Dsui_2005 0.59 +1.1 2,114,584 + Dsui_2005 0.65 -3.0 2,114,594 + Dsui_2005 0.67 +1.1 2,114,613 - Dsui_2005 0.69 -0.9 2,114,613 - +1.1 2,114,698 - Dsui_2005 0.81 +0.1 2,114,892 + +0.1 2,114,934 - -0.5 2,114,942 + +0.1 2,115,081 + Dsui_2006 0.12 -0.5 2,115,146 - Dsui_2006 0.15 -1.7 2,115,164 + +1.1 2,115,549 + Dsui_2006 0.34 +0.1 2,115,577 + +1.1 2,115,680 - +1.1
Or see this region's nucleotide sequence