Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1908 and Dsui_1910 are separated by 362 nucleotides Dsui_1910 and Dsui_1911 are separated by 134 nucleotides Dsui_1911 and Dsui_1912 are separated by 159 nucleotides Dsui_1912 and Dsui_1913 are separated by 1 nucleotides
Dsui_1908: Dsui_1908 - putative Fe-S-cluster redox enzyme, at 2,011,340 to 2,012,671
_1908
Dsui_1910: Dsui_1910 - hypothetical protein, at 2,013,034 to 2,013,381
_1910
Dsui_1911: Dsui_1911 - ParB-like partition protein, at 2,013,516 to 2,014,454
_1911
Dsui_1912: Dsui_1912 - response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain protein, at 2,014,614 to 2,015,177
_1912
Dsui_1913: Dsui_1913 - signal transduction histidine kinase, at 2,015,179 to 2,016,441
_1913
Position (kb)
2013
2014
2015 Strain fitness (log2 ratio)
-2
-1
0
1 at 2012.519 kb on + strand, within Dsui_1908 at 2012.704 kb on - strand at 2012.704 kb on - strand at 2012.724 kb on + strand at 2012.724 kb on + strand at 2013.264 kb on + strand, within Dsui_1910 at 2013.406 kb on - strand at 2013.443 kb on + strand at 2013.615 kb on - strand, within Dsui_1911 at 2013.807 kb on + strand at 2013.862 kb on + strand, within Dsui_1911 at 2014.025 kb on - strand, within Dsui_1911 at 2014.025 kb on - strand, within Dsui_1911 at 2014.100 kb on - strand, within Dsui_1911 at 2014.140 kb on + strand at 2014.208 kb on - strand, within Dsui_1911 at 2014.342 kb on + strand at 2014.396 kb on + strand at 2014.399 kb on - strand at 2014.409 kb on - strand at 2014.472 kb on - strand at 2014.507 kb on - strand at 2014.564 kb on - strand at 2014.833 kb on - strand at 2014.945 kb on + strand at 2015.068 kb on - strand, within Dsui_1912 at 2015.171 kb on - strand at 2015.260 kb on + strand at 2015.430 kb on + strand at 2015.450 kb on + strand, within Dsui_1913
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 2,012,519 + Dsui_1908 0.89 +0.1 2,012,704 - -0.5 2,012,704 - +0.1 2,012,724 + +0.5 2,012,724 + -0.0 2,013,264 + Dsui_1910 0.66 +1.1 2,013,406 - -0.3 2,013,443 + +1.1 2,013,615 - Dsui_1911 0.11 -0.7 2,013,807 + -0.5 2,013,862 + Dsui_1911 0.37 +0.1 2,014,025 - Dsui_1911 0.54 -1.0 2,014,025 - Dsui_1911 0.54 -0.3 2,014,100 - Dsui_1911 0.62 -0.1 2,014,140 + +0.1 2,014,208 - Dsui_1911 0.74 -0.7 2,014,342 + +0.1 2,014,396 + -1.9 2,014,399 - -1.5 2,014,409 - -0.5 2,014,472 - -0.3 2,014,507 - -0.4 2,014,564 - -0.5 2,014,833 - +1.1 2,014,945 + +0.1 2,015,068 - Dsui_1912 0.80 +1.1 2,015,171 - +1.1 2,015,260 + -1.2 2,015,430 + +1.1 2,015,450 + Dsui_1913 0.21 +0.1
Or see this region's nucleotide sequence