Strain Fitness in Dechlorosoma suillum PS around Dsui_1899

Experiment: ALP with Cisplatin 0.0008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1898 and Dsui_1899 are separated by 192 nucleotidesDsui_1899 and Dsui_1900 are separated by 77 nucleotides Dsui_1898: Dsui_1898 - putative signal transduction protein, at 1,997,344 to 1,998,252 _1898 Dsui_1899: Dsui_1899 - rRNA methylase, putative, group 3, at 1,998,445 to 1,999,206 _1899 Dsui_1900: Dsui_1900 - hypothetical protein, at 1,999,284 to 1,999,850 _1900 Position (kb) 1998 1999 2000Strain fitness (log2 ratio) -2 -1 0 1 2at 1997.564 kb on + strand, within Dsui_1898at 1997.591 kb on + strand, within Dsui_1898at 1997.591 kb on - strand, within Dsui_1898at 1997.638 kb on + strand, within Dsui_1898at 1997.645 kb on - strand, within Dsui_1898at 1997.650 kb on + strand, within Dsui_1898at 1997.658 kb on - strand, within Dsui_1898at 1997.694 kb on - strand, within Dsui_1898at 1997.705 kb on + strand, within Dsui_1898at 1997.804 kb on - strand, within Dsui_1898at 1997.934 kb on + strand, within Dsui_1898at 1997.942 kb on - strand, within Dsui_1898at 1997.942 kb on - strand, within Dsui_1898at 1998.039 kb on + strand, within Dsui_1898at 1998.039 kb on + strandat 1998.047 kb on - strand, within Dsui_1898at 1998.047 kb on - strand, within Dsui_1898at 1998.064 kb on - strand, within Dsui_1898at 1998.110 kb on - strand, within Dsui_1898at 1998.207 kb on - strandat 1998.208 kb on + strandat 1998.216 kb on - strandat 1998.334 kb on - strandat 1998.455 kb on - strandat 1998.589 kb on + strand, within Dsui_1899at 1998.667 kb on - strand, within Dsui_1899at 1998.803 kb on - strand, within Dsui_1899at 1998.873 kb on + strand, within Dsui_1899at 1998.873 kb on + strand, within Dsui_1899at 1998.881 kb on - strandat 1998.881 kb on - strandat 1998.937 kb on + strand, within Dsui_1899at 1998.959 kb on + strand, within Dsui_1899at 1999.014 kb on + strand, within Dsui_1899at 1999.014 kb on + strand, within Dsui_1899at 1999.017 kb on + strand, within Dsui_1899at 1999.017 kb on + strand, within Dsui_1899at 1999.017 kb on + strand, within Dsui_1899at 1999.025 kb on - strand, within Dsui_1899at 1999.355 kb on + strand, within Dsui_1900at 1999.427 kb on + strand, within Dsui_1900at 1999.693 kb on + strand, within Dsui_1900at 1999.703 kb on + strand, within Dsui_1900at 1999.705 kb on + strand, within Dsui_1900at 1999.706 kb on - strand, within Dsui_1900at 1999.750 kb on + strand, within Dsui_1900at 1999.808 kb on - strandat 1999.845 kb on + strandat 1999.954 kb on - strandat 1999.954 kb on - strandat 2000.067 kb on + strandat 2000.132 kb on + strandat 2000.172 kb on + strandat 2000.180 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml
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1,997,564 + Dsui_1898 0.24 +1.0
1,997,591 + Dsui_1898 0.27 -1.0
1,997,591 - Dsui_1898 0.27 -0.0
1,997,638 + Dsui_1898 0.32 -1.6
1,997,645 - Dsui_1898 0.33 +1.0
1,997,650 + Dsui_1898 0.34 -0.6
1,997,658 - Dsui_1898 0.35 +0.0
1,997,694 - Dsui_1898 0.39 +1.0
1,997,705 + Dsui_1898 0.40 +1.0
1,997,804 - Dsui_1898 0.51 +0.2
1,997,934 + Dsui_1898 0.65 +0.0
1,997,942 - Dsui_1898 0.66 +0.2
1,997,942 - Dsui_1898 0.66 -0.0
1,998,039 + Dsui_1898 0.76 +0.0
1,998,039 + +1.0
1,998,047 - Dsui_1898 0.77 -0.2
1,998,047 - Dsui_1898 0.77 -0.2
1,998,064 - Dsui_1898 0.79 +1.0
1,998,110 - Dsui_1898 0.84 +0.3
1,998,207 - +1.7
1,998,208 + -1.0
1,998,216 - +0.1
1,998,334 - +0.5
1,998,455 - +1.0
1,998,589 + Dsui_1899 0.19 -1.4
1,998,667 - Dsui_1899 0.29 +0.0
1,998,803 - Dsui_1899 0.47 +1.0
1,998,873 + Dsui_1899 0.56 -0.1
1,998,873 + Dsui_1899 0.56 +2.2
1,998,881 - +1.0
1,998,881 - +1.0
1,998,937 + Dsui_1899 0.65 -1.2
1,998,959 + Dsui_1899 0.67 -0.8
1,999,014 + Dsui_1899 0.75 +0.5
1,999,014 + Dsui_1899 0.75 +0.1
1,999,017 + Dsui_1899 0.75 -0.2
1,999,017 + Dsui_1899 0.75 -0.1
1,999,017 + Dsui_1899 0.75 +0.1
1,999,025 - Dsui_1899 0.76 +0.0
1,999,355 + Dsui_1900 0.13 -0.6
1,999,427 + Dsui_1900 0.25 -0.6
1,999,693 + Dsui_1900 0.72 +1.0
1,999,703 + Dsui_1900 0.74 +0.0
1,999,705 + Dsui_1900 0.74 -1.0
1,999,706 - Dsui_1900 0.74 +1.0
1,999,750 + Dsui_1900 0.82 +0.0
1,999,808 - +1.0
1,999,845 + +1.0
1,999,954 - +1.0
1,999,954 - -0.6
2,000,067 + -0.4
2,000,132 + -2.2
2,000,172 + -0.1
2,000,180 - +1.0

Or see this region's nucleotide sequence