Strain Fitness in Dechlorosoma suillum PS around Dsui_1866

Experiment: ALP with Cisplatin 0.0008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1865 and Dsui_1866 are separated by 39 nucleotidesDsui_1866 and Dsui_1867 overlap by 1 nucleotides Dsui_1865: Dsui_1865 - PAS domain S-box, at 1,959,017 to 1,962,097 _1865 Dsui_1866: Dsui_1866 - CheY-like receiver domain-containing protein, at 1,962,137 to 1,962,496 _1866 Dsui_1867: Dsui_1867 - signal transduction histidine kinase, at 1,962,496 to 1,964,172 _1867 Position (kb) 1962 1963Strain fitness (log2 ratio) -2 -1 0 1at 1961.215 kb on + strand, within Dsui_1865at 1961.234 kb on + strandat 1961.234 kb on + strand, within Dsui_1865at 1961.234 kb on + strand, within Dsui_1865at 1961.258 kb on + strandat 1961.316 kb on + strand, within Dsui_1865at 1961.359 kb on - strandat 1961.361 kb on + strandat 1961.402 kb on - strandat 1961.608 kb on + strand, within Dsui_1865at 1961.608 kb on + strand, within Dsui_1865at 1961.885 kb on - strandat 1961.915 kb on - strandat 1962.075 kb on + strandat 1962.148 kb on + strandat 1962.166 kb on + strandat 1962.237 kb on + strand, within Dsui_1866at 1962.318 kb on - strand, within Dsui_1866at 1962.477 kb on + strandat 1962.520 kb on - strandat 1962.530 kb on - strandat 1962.612 kb on + strandat 1962.621 kb on - strandat 1962.637 kb on - strandat 1962.767 kb on + strand, within Dsui_1867at 1962.829 kb on + strandat 1962.895 kb on - strand, within Dsui_1867at 1962.944 kb on + strand, within Dsui_1867at 1962.944 kb on + strandat 1963.051 kb on - strandat 1963.104 kb on + strand, within Dsui_1867at 1963.134 kb on - strand, within Dsui_1867at 1963.143 kb on + strand, within Dsui_1867at 1963.151 kb on + strand, within Dsui_1867at 1963.151 kb on - strand, within Dsui_1867at 1963.202 kb on + strandat 1963.204 kb on - strandat 1963.210 kb on - strand, within Dsui_1867at 1963.374 kb on - strand, within Dsui_1867at 1963.430 kb on - strandat 1963.479 kb on + strand, within Dsui_1867

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml
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1,961,215 + Dsui_1865 0.71 -1.1
1,961,234 + -0.1
1,961,234 + Dsui_1865 0.72 -0.1
1,961,234 + Dsui_1865 0.72 +0.9
1,961,258 + -0.1
1,961,316 + Dsui_1865 0.75 -0.1
1,961,359 - +0.9
1,961,361 + +0.9
1,961,402 - +0.9
1,961,608 + Dsui_1865 0.84 +0.9
1,961,608 + Dsui_1865 0.84 -0.7
1,961,885 - +0.9
1,961,915 - -0.1
1,962,075 + -2.4
1,962,148 + +0.9
1,962,166 + -0.1
1,962,237 + Dsui_1866 0.28 +0.9
1,962,318 - Dsui_1866 0.50 -0.9
1,962,477 + -1.7
1,962,520 - -0.2
1,962,530 - -0.6
1,962,612 + +0.9
1,962,621 - +0.9
1,962,637 - -1.1
1,962,767 + Dsui_1867 0.16 -1.1
1,962,829 + +0.9
1,962,895 - Dsui_1867 0.24 -2.1
1,962,944 + Dsui_1867 0.27 -1.1
1,962,944 + +0.9
1,963,051 - -0.7
1,963,104 + Dsui_1867 0.36 -0.1
1,963,134 - Dsui_1867 0.38 -0.7
1,963,143 + Dsui_1867 0.39 -0.1
1,963,151 + Dsui_1867 0.39 -0.7
1,963,151 - Dsui_1867 0.39 -2.1
1,963,202 + -0.1
1,963,204 - +0.9
1,963,210 - Dsui_1867 0.43 -1.9
1,963,374 - Dsui_1867 0.52 -0.7
1,963,430 - +0.9
1,963,479 + Dsui_1867 0.59 -0.1

Or see this region's nucleotide sequence