Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1818 and Dsui_1819 are separated by 71 nucleotides Dsui_1819 and Dsui_1820 are separated by 268 nucleotides
Dsui_1818: Dsui_1818 - anthranilate phosphoribosyltransferase, at 1,916,575 to 1,917,558
_1818
Dsui_1819: Dsui_1819 - 4-oxalocrotonate tautomerase family enzyme, at 1,917,630 to 1,917,830
_1819
Dsui_1820: Dsui_1820 - ABC-type branched-chain amino acid transport system, periplasmic component, at 1,918,099 to 1,919,232
_1820
Position (kb)
1917
1918 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1916.636 kb on + strand at 1916.732 kb on - strand, within Dsui_1818 at 1916.800 kb on + strand, within Dsui_1818 at 1916.914 kb on + strand, within Dsui_1818 at 1917.059 kb on + strand, within Dsui_1818 at 1917.059 kb on + strand, within Dsui_1818 at 1917.067 kb on - strand, within Dsui_1818 at 1917.094 kb on + strand, within Dsui_1818 at 1917.152 kb on - strand at 1917.152 kb on - strand, within Dsui_1818 at 1917.191 kb on + strand, within Dsui_1818 at 1917.199 kb on - strand at 1917.386 kb on + strand, within Dsui_1818 at 1917.398 kb on + strand, within Dsui_1818 at 1917.418 kb on + strand, within Dsui_1818 at 1917.418 kb on + strand at 1917.510 kb on + strand at 1917.518 kb on - strand at 1917.518 kb on - strand at 1917.536 kb on + strand at 1917.561 kb on - strand at 1917.617 kb on - strand at 1917.644 kb on + strand at 1917.722 kb on - strand, within Dsui_1819 at 1917.807 kb on + strand, within Dsui_1819 at 1917.843 kb on + strand at 1917.846 kb on - strand at 1918.010 kb on + strand at 1918.055 kb on - strand at 1918.236 kb on + strand, within Dsui_1820 at 1918.245 kb on + strand at 1918.345 kb on + strand, within Dsui_1820 at 1918.435 kb on + strand at 1918.435 kb on + strand, within Dsui_1820 at 1918.593 kb on - strand at 1918.738 kb on + strand at 1918.746 kb on - strand at 1918.782 kb on - strand at 1918.795 kb on - strand, within Dsui_1820
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 1,916,636 + -0.8 1,916,732 - Dsui_1818 0.16 +0.8 1,916,800 + Dsui_1818 0.23 -3.3 1,916,914 + Dsui_1818 0.34 +0.2 1,917,059 + Dsui_1818 0.49 -2.0 1,917,059 + Dsui_1818 0.49 -1.1 1,917,067 - Dsui_1818 0.50 -0.8 1,917,094 + Dsui_1818 0.53 -1.3 1,917,152 - +0.8 1,917,152 - Dsui_1818 0.59 -0.2 1,917,191 + Dsui_1818 0.63 -2.9 1,917,199 - -0.2 1,917,386 + Dsui_1818 0.82 -4.0 1,917,398 + Dsui_1818 0.84 -0.8 1,917,418 + Dsui_1818 0.86 -2.0 1,917,418 + -0.8 1,917,510 + -0.2 1,917,518 - +0.8 1,917,518 - +0.8 1,917,536 + +0.2 1,917,561 - -1.5 1,917,617 - -2.0 1,917,644 + -1.2 1,917,722 - Dsui_1819 0.46 -1.2 1,917,807 + Dsui_1819 0.88 -2.5 1,917,843 + -1.2 1,917,846 - -0.2 1,918,010 + -2.2 1,918,055 - -0.8 1,918,236 + Dsui_1820 0.12 -0.8 1,918,245 + +0.8 1,918,345 + Dsui_1820 0.22 -1.5 1,918,435 + +0.8 1,918,435 + Dsui_1820 0.30 +0.8 1,918,593 - +0.8 1,918,738 + +0.8 1,918,746 - +0.8 1,918,782 - +0.8 1,918,795 - Dsui_1820 0.61 -0.3
Or see this region's nucleotide sequence