Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1806 and Dsui_1807 are separated by 101 nucleotides Dsui_1807 and Dsui_1809 are separated by 385 nucleotides Dsui_1809 and Dsui_1810 are separated by 15 nucleotides Dsui_1810 and Dsui_1811 overlap by 1 nucleotides
Dsui_1806: Dsui_1806 - 23S ribosomal RNA, at 1,903,438 to 1,906,319
_1806
Dsui_1807: Dsui_1807 - 5S ribosomal RNA, at 1,906,421 to 1,906,534
_1807
Dsui_1809: Dsui_1809 - DNA polymerase III, subunit gamma/tau, at 1,906,920 to 1,908,566
_1809
Dsui_1810: Dsui_1810 - DNA-binding protein, YbaB/EbfC family, at 1,908,582 to 1,908,905
_1810
Dsui_1811: Dsui_1811 - recombination protein RecR, at 1,908,905 to 1,909,507
_1811
Position (kb)
1906
1907
1908
1909 Strain fitness (log2 ratio)
-7
-6
-5
-4
-3
-2
-1
0
1 at 1906.553 kb on + strand at 1906.554 kb on + strand at 1906.564 kb on + strand at 1906.604 kb on + strand at 1906.658 kb on - strand at 1906.715 kb on - strand at 1908.608 kb on + strand at 1908.645 kb on - strand at 1908.647 kb on + strand, within Dsui_1810 at 1908.657 kb on + strand, within Dsui_1810 at 1908.657 kb on + strand, within Dsui_1810 at 1908.683 kb on - strand, within Dsui_1810 at 1908.841 kb on - strand, within Dsui_1810 at 1908.868 kb on + strand, within Dsui_1810 at 1908.868 kb on + strand, within Dsui_1810 at 1908.876 kb on - strand at 1908.904 kb on - strand at 1908.934 kb on + strand at 1908.942 kb on - strand at 1908.982 kb on + strand, within Dsui_1811 at 1909.089 kb on - strand, within Dsui_1811 at 1909.097 kb on - strand, within Dsui_1811 at 1909.097 kb on - strand, within Dsui_1811 at 1909.192 kb on + strand, within Dsui_1811 at 1909.195 kb on - strand, within Dsui_1811 at 1909.223 kb on + strand, within Dsui_1811 at 1909.474 kb on + strand at 1909.476 kb on - strand at 1909.539 kb on + strand at 1909.541 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 1,906,553 + -0.1 1,906,554 + -0.4 1,906,564 + -0.2 1,906,604 + -0.4 1,906,658 - -0.2 1,906,715 - -0.2 1,908,608 + -2.7 1,908,645 - -0.2 1,908,647 + Dsui_1810 0.20 -4.8 1,908,657 + Dsui_1810 0.23 -3.9 1,908,657 + Dsui_1810 0.23 -6.9 1,908,683 - Dsui_1810 0.31 -0.8 1,908,841 - Dsui_1810 0.80 +0.8 1,908,868 + Dsui_1810 0.88 -4.7 1,908,868 + Dsui_1810 0.88 -3.7 1,908,876 - -0.2 1,908,904 - -0.8 1,908,934 + -6.4 1,908,942 - -0.8 1,908,982 + Dsui_1811 0.13 -6.8 1,909,089 - Dsui_1811 0.31 -0.8 1,909,097 - Dsui_1811 0.32 -0.2 1,909,097 - Dsui_1811 0.32 -1.2 1,909,192 + Dsui_1811 0.48 -6.2 1,909,195 - Dsui_1811 0.48 +0.8 1,909,223 + Dsui_1811 0.53 -5.9 1,909,474 + -6.1 1,909,476 - -3.0 1,909,539 + +0.1 1,909,541 - -0.9
Or see this region's nucleotide sequence