Strain Fitness in Dechlorosoma suillum PS around Dsui_1703

Experiment: ALP with Cisplatin 0.0008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1701 and Dsui_1702 are separated by 204 nucleotidesDsui_1702 and Dsui_1703 are separated by 14 nucleotidesDsui_1703 and Dsui_1704 are separated by 275 nucleotides Dsui_1701: Dsui_1701 - restriction endonuclease, at 1,788,477 to 1,789,109 _1701 Dsui_1702: Dsui_1702 - TonB family protein, at 1,789,314 to 1,790,039 _1702 Dsui_1703: Dsui_1703 - ADP-ribose pyrophosphatase, at 1,790,054 to 1,790,602 _1703 Dsui_1704: Dsui_1704 - flagellar motor stator protein MotA, at 1,790,878 to 1,791,735 _1704 Position (kb) 1790 1791Strain fitness (log2 ratio) -2 -1 0 1at 1789.210 kb on + strandat 1789.310 kb on + strandat 1789.366 kb on + strandat 1789.385 kb on - strandat 1789.488 kb on + strandat 1789.714 kb on - strand, within Dsui_1702at 1789.747 kb on + strand, within Dsui_1702at 1789.834 kb on + strand, within Dsui_1702at 1789.885 kb on - strand, within Dsui_1702at 1789.973 kb on + strandat 1790.028 kb on - strandat 1790.083 kb on + strandat 1790.083 kb on + strandat 1790.083 kb on + strandat 1790.091 kb on - strandat 1790.091 kb on - strandat 1790.091 kb on - strandat 1790.093 kb on + strandat 1790.102 kb on + strandat 1790.106 kb on - strandat 1790.175 kb on - strand, within Dsui_1703at 1790.221 kb on + strand, within Dsui_1703at 1790.264 kb on + strand, within Dsui_1703at 1790.282 kb on - strand, within Dsui_1703at 1790.283 kb on - strand, within Dsui_1703at 1790.341 kb on - strand, within Dsui_1703at 1790.346 kb on - strand, within Dsui_1703at 1790.433 kb on - strand, within Dsui_1703at 1790.449 kb on - strand, within Dsui_1703at 1790.493 kb on + strand, within Dsui_1703at 1790.507 kb on - strand, within Dsui_1703at 1790.592 kb on + strandat 1790.595 kb on - strandat 1790.610 kb on + strandat 1790.610 kb on + strandat 1790.613 kb on + strandat 1790.616 kb on - strandat 1790.618 kb on - strandat 1790.679 kb on - strandat 1790.683 kb on + strandat 1790.685 kb on + strandat 1790.692 kb on - strandat 1790.778 kb on - strandat 1790.801 kb on + strandat 1790.854 kb on + strandat 1790.861 kb on + strandat 1790.863 kb on + strandat 1791.023 kb on + strand, within Dsui_1704at 1791.094 kb on - strand, within Dsui_1704at 1791.106 kb on - strandat 1791.254 kb on + strand, within Dsui_1704at 1791.273 kb on + strand, within Dsui_1704at 1791.285 kb on + strand, within Dsui_1704at 1791.293 kb on + strand, within Dsui_1704at 1791.359 kb on - strand, within Dsui_1704at 1791.451 kb on - strand, within Dsui_1704at 1791.456 kb on - strand, within Dsui_1704at 1791.550 kb on - strand, within Dsui_1704at 1791.582 kb on - strand, within Dsui_1704

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml
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1,789,210 + +0.7
1,789,310 + -0.3
1,789,366 + -0.3
1,789,385 - +0.7
1,789,488 + +0.7
1,789,714 - Dsui_1702 0.55 -2.6
1,789,747 + Dsui_1702 0.60 -1.3
1,789,834 + Dsui_1702 0.72 -0.3
1,789,885 - Dsui_1702 0.79 +0.7
1,789,973 + -0.9
1,790,028 - -0.8
1,790,083 + +0.7
1,790,083 + -0.3
1,790,083 + -0.3
1,790,091 - +0.1
1,790,091 - -0.3
1,790,091 - -0.1
1,790,093 + +0.7
1,790,102 + +0.7
1,790,106 - -0.7
1,790,175 - Dsui_1703 0.22 +0.3
1,790,221 + Dsui_1703 0.30 -1.3
1,790,264 + Dsui_1703 0.38 +0.7
1,790,282 - Dsui_1703 0.42 +0.9
1,790,283 - Dsui_1703 0.42 -0.6
1,790,341 - Dsui_1703 0.52 +0.2
1,790,346 - Dsui_1703 0.53 -0.5
1,790,433 - Dsui_1703 0.69 +0.6
1,790,449 - Dsui_1703 0.72 -0.3
1,790,493 + Dsui_1703 0.80 -1.3
1,790,507 - Dsui_1703 0.83 -0.2
1,790,592 + +0.7
1,790,595 - -0.1
1,790,610 + -1.3
1,790,610 + -0.9
1,790,613 + +0.7
1,790,616 - +0.6
1,790,618 - +0.2
1,790,679 - -1.9
1,790,683 + +0.7
1,790,685 + -1.6
1,790,692 - -1.3
1,790,778 - -0.9
1,790,801 + +0.2
1,790,854 + -0.2
1,790,861 + -0.3
1,790,863 + +0.6
1,791,023 + Dsui_1704 0.17 -0.0
1,791,094 - Dsui_1704 0.25 -0.3
1,791,106 - -0.3
1,791,254 + Dsui_1704 0.44 -0.0
1,791,273 + Dsui_1704 0.46 +0.3
1,791,285 + Dsui_1704 0.47 -0.2
1,791,293 + Dsui_1704 0.48 +0.8
1,791,359 - Dsui_1704 0.56 +0.7
1,791,451 - Dsui_1704 0.67 -1.9
1,791,456 - Dsui_1704 0.67 -0.9
1,791,550 - Dsui_1704 0.78 -0.3
1,791,582 - Dsui_1704 0.82 -0.9

Or see this region's nucleotide sequence