Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1674 and Dsui_1675 are separated by 4 nucleotides Dsui_1675 and Dsui_1676 are separated by 79 nucleotides Dsui_1676 and Dsui_1677 are separated by 50 nucleotides Dsui_1677 and Dsui_1678 are separated by 24 nucleotides Dsui_1678 and Dsui_1679 are separated by 1 nucleotides
Dsui_1674: Dsui_1674 - EAL domain-containing protein, at 1,761,002 to 1,761,721
_1674
Dsui_1675: Dsui_1675 - hypothetical protein, at 1,761,726 to 1,762,052
_1675
Dsui_1676: Dsui_1676 - biopolymer transport protein, at 1,762,132 to 1,762,623
_1676
Dsui_1677: Dsui_1677 - ribosomal protein S4, bacterial/organelle type, at 1,762,674 to 1,763,291
_1677
Dsui_1678: Dsui_1678 - hypothetical protein, at 1,763,316 to 1,763,588
_1678
Dsui_1679: Dsui_1679 - Mg chelatase, cobalamin biosynthesis protein CobN, at 1,763,590 to 1,767,693
_1679
Position (kb)
1762
1763 Strain fitness (log2 ratio)
-2
-1
0
1 at 1761.147 kb on + strand, within Dsui_1674 at 1761.163 kb on - strand at 1761.195 kb on + strand at 1761.204 kb on - strand, within Dsui_1674 at 1761.400 kb on + strand at 1761.478 kb on - strand, within Dsui_1674 at 1761.525 kb on + strand, within Dsui_1674 at 1761.608 kb on - strand, within Dsui_1674 at 1761.716 kb on - strand at 1761.747 kb on + strand at 1761.774 kb on - strand at 1761.807 kb on - strand at 1761.874 kb on - strand, within Dsui_1675 at 1761.885 kb on - strand, within Dsui_1675 at 1761.924 kb on - strand, within Dsui_1675 at 1761.932 kb on + strand, within Dsui_1675 at 1762.048 kb on - strand at 1762.089 kb on + strand at 1762.110 kb on + strand at 1762.129 kb on + strand at 1762.164 kb on - strand at 1762.257 kb on - strand, within Dsui_1676 at 1762.268 kb on + strand at 1762.401 kb on + strand at 1762.409 kb on - strand, within Dsui_1676 at 1762.416 kb on + strand, within Dsui_1676 at 1762.417 kb on - strand, within Dsui_1676 at 1762.424 kb on - strand, within Dsui_1676 at 1762.524 kb on + strand, within Dsui_1676 at 1762.524 kb on + strand at 1762.532 kb on - strand, within Dsui_1676 at 1762.557 kb on + strand at 1762.560 kb on - strand, within Dsui_1676 at 1762.565 kb on - strand, within Dsui_1676 at 1762.589 kb on + strand at 1762.705 kb on - strand at 1762.721 kb on - strand at 1762.836 kb on + strand, within Dsui_1677 at 1763.031 kb on + strand, within Dsui_1677 at 1763.294 kb on - strand at 1763.307 kb on + strand at 1763.327 kb on - strand at 1763.422 kb on + strand at 1763.540 kb on - strand, within Dsui_1678 at 1763.596 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 1,761,147 + Dsui_1674 0.20 -0.9 1,761,163 - -0.3 1,761,195 + +0.7 1,761,204 - Dsui_1674 0.28 -0.9 1,761,400 + +0.7 1,761,478 - Dsui_1674 0.66 -2.3 1,761,525 + Dsui_1674 0.73 -0.9 1,761,608 - Dsui_1674 0.84 -2.1 1,761,716 - -1.6 1,761,747 + -0.9 1,761,774 - +0.7 1,761,807 - +0.7 1,761,874 - Dsui_1675 0.45 +0.7 1,761,885 - Dsui_1675 0.49 -1.3 1,761,924 - Dsui_1675 0.61 +0.7 1,761,932 + Dsui_1675 0.63 +0.7 1,762,048 - +0.7 1,762,089 + +0.7 1,762,110 + +0.7 1,762,129 + +0.7 1,762,164 - +0.7 1,762,257 - Dsui_1676 0.25 -0.3 1,762,268 + -0.3 1,762,401 + -0.9 1,762,409 - Dsui_1676 0.56 -1.3 1,762,416 + Dsui_1676 0.58 -0.9 1,762,417 - Dsui_1676 0.58 -1.3 1,762,424 - Dsui_1676 0.59 -0.3 1,762,524 + Dsui_1676 0.80 +0.7 1,762,524 + -0.3 1,762,532 - Dsui_1676 0.81 +0.7 1,762,557 + +0.7 1,762,560 - Dsui_1676 0.87 -1.3 1,762,565 - Dsui_1676 0.88 -0.9 1,762,589 + -0.9 1,762,705 - -0.9 1,762,721 - -1.6 1,762,836 + Dsui_1677 0.26 +0.7 1,763,031 + Dsui_1677 0.58 -1.3 1,763,294 - -1.6 1,763,307 + -0.3 1,763,327 - +0.7 1,763,422 + -0.9 1,763,540 - Dsui_1678 0.82 -0.9 1,763,596 - -1.3
Or see this region's nucleotide sequence