Strain Fitness in Dechlorosoma suillum PS around Dsui_1603

Experiment: ALP with Cisplatin 0.0008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_1602 and Dsui_1603 are separated by 198 nucleotidesDsui_1603 and Dsui_1604 are separated by 275 nucleotides Dsui_1602: Dsui_1602 - porphobilinogen deaminase, at 1,682,854 to 1,683,813 _1602 Dsui_1603: Dsui_1603 - phosphoenolpyruvate carboxylase, at 1,684,012 to 1,686,819 _1603 Dsui_1604: Dsui_1604 - putative membrane protein, at 1,687,095 to 1,687,727 _1604 Position (kb) 1684 1685 1686 1687Strain fitness (log2 ratio) -2 -1 0 1at 1684.246 kb on + strandat 1684.262 kb on + strandat 1685.258 kb on + strand, within Dsui_1603at 1685.273 kb on + strand, within Dsui_1603at 1685.363 kb on + strandat 1686.108 kb on + strand, within Dsui_1603at 1686.175 kb on + strandat 1686.404 kb on + strand, within Dsui_1603at 1686.686 kb on + strandat 1686.885 kb on - strandat 1686.900 kb on + strandat 1686.905 kb on + strandat 1686.905 kb on + strandat 1687.038 kb on + strandat 1687.046 kb on - strandat 1687.126 kb on + strandat 1687.158 kb on - strandat 1687.183 kb on - strand, within Dsui_1604at 1687.195 kb on + strand, within Dsui_1604at 1687.204 kb on - strand, within Dsui_1604at 1687.247 kb on + strand, within Dsui_1604at 1687.268 kb on + strand, within Dsui_1604at 1687.338 kb on - strand, within Dsui_1604at 1687.340 kb on + strand, within Dsui_1604at 1687.348 kb on - strandat 1687.356 kb on + strand, within Dsui_1604at 1687.375 kb on + strand, within Dsui_1604at 1687.416 kb on - strand, within Dsui_1604at 1687.557 kb on - strand, within Dsui_1604at 1687.577 kb on + strand, within Dsui_1604at 1687.610 kb on - strand, within Dsui_1604at 1687.667 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml
remove
1,684,246 + +0.6
1,684,262 + +0.6
1,685,258 + Dsui_1603 0.44 -1.0
1,685,273 + Dsui_1603 0.45 -1.7
1,685,363 + +0.6
1,686,108 + Dsui_1603 0.75 +0.6
1,686,175 + -0.4
1,686,404 + Dsui_1603 0.85 +0.6
1,686,686 + +0.6
1,686,885 - +0.6
1,686,900 + -0.4
1,686,905 + -0.4
1,686,905 + +0.3
1,687,038 + +0.5
1,687,046 - -1.0
1,687,126 + -0.0
1,687,158 - -1.7
1,687,183 - Dsui_1604 0.14 -1.0
1,687,195 + Dsui_1604 0.16 -0.7
1,687,204 - Dsui_1604 0.17 -2.4
1,687,247 + Dsui_1604 0.24 +0.6
1,687,268 + Dsui_1604 0.27 +1.6
1,687,338 - Dsui_1604 0.38 -1.7
1,687,340 + Dsui_1604 0.39 -1.0
1,687,348 - -0.4
1,687,356 + Dsui_1604 0.41 -2.2
1,687,375 + Dsui_1604 0.44 -1.4
1,687,416 - Dsui_1604 0.51 +0.6
1,687,557 - Dsui_1604 0.73 +0.6
1,687,577 + Dsui_1604 0.76 -2.7
1,687,610 - Dsui_1604 0.81 -1.0
1,687,667 - +0.6

Or see this region's nucleotide sequence