Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1597 and Dsui_1598 are separated by 174 nucleotides Dsui_1598 and Dsui_1599 are separated by 110 nucleotides Dsui_1599 and Dsui_1600 overlap by 4 nucleotides
Dsui_1597: Dsui_1597 - coproporphyrinogen III oxidase, at 1,678,199 to 1,679,107
_1597
Dsui_1598: Dsui_1598 - hypothetical protein, at 1,679,282 to 1,679,521
_1598
Dsui_1599: Dsui_1599 - putative enzyme of heme biosynthesis, at 1,679,632 to 1,680,834
_1599
Dsui_1600: Dsui_1600 - putative enzyme of heme biosynthesis, at 1,680,831 to 1,681,916
_1600
Position (kb)
1679
1680
1681 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1679.200 kb on - strand at 1679.305 kb on + strand at 1679.305 kb on + strand at 1679.305 kb on + strand at 1679.312 kb on - strand, within Dsui_1598 at 1679.312 kb on - strand, within Dsui_1598 at 1679.422 kb on - strand, within Dsui_1598 at 1679.422 kb on - strand, within Dsui_1598 at 1679.506 kb on + strand at 1679.514 kb on - strand at 1679.514 kb on - strand at 1679.519 kb on - strand at 1679.538 kb on - strand at 1679.748 kb on - strand at 1679.781 kb on - strand, within Dsui_1599 at 1680.002 kb on + strand, within Dsui_1599 at 1680.010 kb on - strand, within Dsui_1599 at 1680.102 kb on + strand, within Dsui_1599 at 1680.251 kb on + strand, within Dsui_1599 at 1680.366 kb on + strand, within Dsui_1599 at 1680.389 kb on - strand, within Dsui_1599 at 1680.394 kb on + strand, within Dsui_1599 at 1680.584 kb on + strand, within Dsui_1599 at 1680.592 kb on - strand, within Dsui_1599 at 1680.769 kb on - strand at 1680.849 kb on - strand at 1680.851 kb on + strand at 1680.859 kb on - strand at 1680.861 kb on + strand at 1680.868 kb on + strand at 1681.078 kb on - strand, within Dsui_1600 at 1681.090 kb on + strand, within Dsui_1600 at 1681.113 kb on - strand, within Dsui_1600 at 1681.131 kb on + strand at 1681.189 kb on - strand, within Dsui_1600 at 1681.386 kb on - strand, within Dsui_1600 at 1681.471 kb on + strand, within Dsui_1600 at 1681.504 kb on - strand, within Dsui_1600 at 1681.504 kb on - strand, within Dsui_1600 at 1681.513 kb on + strand at 1681.518 kb on + strand at 1681.656 kb on - strand, within Dsui_1600 at 1681.783 kb on - strand, within Dsui_1600
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 1,679,200 - -1.4 1,679,305 + -2.1 1,679,305 + +0.6 1,679,305 + -1.0 1,679,312 - Dsui_1598 0.12 +0.1 1,679,312 - Dsui_1598 0.12 -0.4 1,679,422 - Dsui_1598 0.58 -0.4 1,679,422 - Dsui_1598 0.58 -0.4 1,679,506 + +0.6 1,679,514 - -0.7 1,679,514 - -0.3 1,679,519 - -0.6 1,679,538 - -0.6 1,679,748 - -1.6 1,679,781 - Dsui_1599 0.12 -4.0 1,680,002 + Dsui_1599 0.31 -0.4 1,680,010 - Dsui_1599 0.31 -4.9 1,680,102 + Dsui_1599 0.39 -1.0 1,680,251 + Dsui_1599 0.51 -0.4 1,680,366 + Dsui_1599 0.61 -1.4 1,680,389 - Dsui_1599 0.63 -4.5 1,680,394 + Dsui_1599 0.63 -1.0 1,680,584 + Dsui_1599 0.79 -1.4 1,680,592 - Dsui_1599 0.80 -3.2 1,680,769 - -4.6 1,680,849 - -3.6 1,680,851 + +0.6 1,680,859 - -2.9 1,680,861 + -1.7 1,680,868 + -0.4 1,681,078 - Dsui_1600 0.23 -4.1 1,681,090 + Dsui_1600 0.24 -0.4 1,681,113 - Dsui_1600 0.26 -2.7 1,681,131 + +0.6 1,681,189 - Dsui_1600 0.33 -3.9 1,681,386 - Dsui_1600 0.51 -3.6 1,681,471 + Dsui_1600 0.59 +0.6 1,681,504 - Dsui_1600 0.62 -3.0 1,681,504 - Dsui_1600 0.62 -3.3 1,681,513 + +0.6 1,681,518 + -0.4 1,681,656 - Dsui_1600 0.76 -4.2 1,681,783 - Dsui_1600 0.88 -4.2
Or see this region's nucleotide sequence