Strain Fitness in Dechlorosoma suillum PS around Dsui_1599

Experiment: ALP with Cisplatin 0.0008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1597 and Dsui_1598 are separated by 174 nucleotidesDsui_1598 and Dsui_1599 are separated by 110 nucleotidesDsui_1599 and Dsui_1600 overlap by 4 nucleotides Dsui_1597: Dsui_1597 - coproporphyrinogen III oxidase, at 1,678,199 to 1,679,107 _1597 Dsui_1598: Dsui_1598 - hypothetical protein, at 1,679,282 to 1,679,521 _1598 Dsui_1599: Dsui_1599 - putative enzyme of heme biosynthesis, at 1,679,632 to 1,680,834 _1599 Dsui_1600: Dsui_1600 - putative enzyme of heme biosynthesis, at 1,680,831 to 1,681,916 _1600 Position (kb) 1679 1680 1681Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1679.200 kb on - strandat 1679.305 kb on + strandat 1679.305 kb on + strandat 1679.305 kb on + strandat 1679.312 kb on - strand, within Dsui_1598at 1679.312 kb on - strand, within Dsui_1598at 1679.422 kb on - strand, within Dsui_1598at 1679.422 kb on - strand, within Dsui_1598at 1679.506 kb on + strandat 1679.514 kb on - strandat 1679.514 kb on - strandat 1679.519 kb on - strandat 1679.538 kb on - strandat 1679.748 kb on - strandat 1679.781 kb on - strand, within Dsui_1599at 1680.002 kb on + strand, within Dsui_1599at 1680.010 kb on - strand, within Dsui_1599at 1680.102 kb on + strand, within Dsui_1599at 1680.251 kb on + strand, within Dsui_1599at 1680.366 kb on + strand, within Dsui_1599at 1680.389 kb on - strand, within Dsui_1599at 1680.394 kb on + strand, within Dsui_1599at 1680.584 kb on + strand, within Dsui_1599at 1680.592 kb on - strand, within Dsui_1599at 1680.769 kb on - strandat 1680.849 kb on - strandat 1680.851 kb on + strandat 1680.859 kb on - strandat 1680.861 kb on + strandat 1680.868 kb on + strandat 1681.078 kb on - strand, within Dsui_1600at 1681.090 kb on + strand, within Dsui_1600at 1681.113 kb on - strand, within Dsui_1600at 1681.131 kb on + strandat 1681.189 kb on - strand, within Dsui_1600at 1681.386 kb on - strand, within Dsui_1600at 1681.471 kb on + strand, within Dsui_1600at 1681.504 kb on - strand, within Dsui_1600at 1681.504 kb on - strand, within Dsui_1600at 1681.513 kb on + strandat 1681.518 kb on + strandat 1681.656 kb on - strand, within Dsui_1600at 1681.783 kb on - strand, within Dsui_1600

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml
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1,679,200 - -1.4
1,679,305 + -2.1
1,679,305 + +0.6
1,679,305 + -1.0
1,679,312 - Dsui_1598 0.12 +0.1
1,679,312 - Dsui_1598 0.12 -0.4
1,679,422 - Dsui_1598 0.58 -0.4
1,679,422 - Dsui_1598 0.58 -0.4
1,679,506 + +0.6
1,679,514 - -0.7
1,679,514 - -0.3
1,679,519 - -0.6
1,679,538 - -0.6
1,679,748 - -1.6
1,679,781 - Dsui_1599 0.12 -4.0
1,680,002 + Dsui_1599 0.31 -0.4
1,680,010 - Dsui_1599 0.31 -4.9
1,680,102 + Dsui_1599 0.39 -1.0
1,680,251 + Dsui_1599 0.51 -0.4
1,680,366 + Dsui_1599 0.61 -1.4
1,680,389 - Dsui_1599 0.63 -4.5
1,680,394 + Dsui_1599 0.63 -1.0
1,680,584 + Dsui_1599 0.79 -1.4
1,680,592 - Dsui_1599 0.80 -3.2
1,680,769 - -4.6
1,680,849 - -3.6
1,680,851 + +0.6
1,680,859 - -2.9
1,680,861 + -1.7
1,680,868 + -0.4
1,681,078 - Dsui_1600 0.23 -4.1
1,681,090 + Dsui_1600 0.24 -0.4
1,681,113 - Dsui_1600 0.26 -2.7
1,681,131 + +0.6
1,681,189 - Dsui_1600 0.33 -3.9
1,681,386 - Dsui_1600 0.51 -3.6
1,681,471 + Dsui_1600 0.59 +0.6
1,681,504 - Dsui_1600 0.62 -3.0
1,681,504 - Dsui_1600 0.62 -3.3
1,681,513 + +0.6
1,681,518 + -0.4
1,681,656 - Dsui_1600 0.76 -4.2
1,681,783 - Dsui_1600 0.88 -4.2

Or see this region's nucleotide sequence