Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1588 and Dsui_1589 overlap by 1 nucleotides Dsui_1589 and Dsui_1590 are separated by 13 nucleotides Dsui_1590 and Dsui_1591 are separated by 111 nucleotides
Dsui_1588: Dsui_1588 - aminoglycoside phosphotransferase, at 1,668,898 to 1,669,899
_1588
Dsui_1589: Dsui_1589 - Nucleoside-diphosphate-sugar pyrophosphorylase family protein, at 1,669,899 to 1,670,582
_1589
Dsui_1590: Dsui_1590 - hypothetical protein, at 1,670,596 to 1,670,868
_1590
Dsui_1591: Dsui_1591 - Xaa-Pro aminopeptidase, at 1,670,980 to 1,672,281
_1591
Position (kb)
1669
1670
1671 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1668.916 kb on + strand at 1668.921 kb on + strand at 1669.060 kb on + strand, within Dsui_1588 at 1669.073 kb on + strand, within Dsui_1588 at 1669.146 kb on + strand, within Dsui_1588 at 1669.176 kb on + strand, within Dsui_1588 at 1669.184 kb on + strand, within Dsui_1588 at 1669.192 kb on - strand at 1669.240 kb on - strand, within Dsui_1588 at 1669.261 kb on + strand, within Dsui_1588 at 1669.332 kb on - strand, within Dsui_1588 at 1669.469 kb on + strand, within Dsui_1588 at 1669.525 kb on + strand, within Dsui_1588 at 1669.525 kb on + strand, within Dsui_1588 at 1669.525 kb on + strand, within Dsui_1588 at 1669.525 kb on + strand, within Dsui_1588 at 1669.533 kb on - strand at 1669.533 kb on - strand at 1669.610 kb on - strand, within Dsui_1588 at 1669.790 kb on + strand, within Dsui_1588 at 1669.884 kb on + strand at 1669.961 kb on + strand at 1670.068 kb on - strand, within Dsui_1589 at 1670.075 kb on + strand, within Dsui_1589 at 1670.110 kb on - strand at 1670.186 kb on + strand, within Dsui_1589 at 1670.238 kb on + strand, within Dsui_1589 at 1670.479 kb on + strand, within Dsui_1589 at 1670.483 kb on + strand, within Dsui_1589 at 1670.500 kb on + strand, within Dsui_1589 at 1670.576 kb on + strand at 1670.807 kb on - strand at 1670.814 kb on + strand, within Dsui_1590 at 1670.819 kb on + strand, within Dsui_1590 at 1670.819 kb on + strand, within Dsui_1590 at 1670.850 kb on + strand at 1670.850 kb on + strand at 1670.850 kb on + strand at 1670.858 kb on - strand at 1670.858 kb on - strand at 1670.914 kb on - strand at 1671.246 kb on + strand, within Dsui_1591 at 1671.555 kb on + strand, within Dsui_1591 at 1671.555 kb on + strand, within Dsui_1591
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 1,668,916 + -1.1 1,668,921 + -0.9 1,669,060 + Dsui_1588 0.16 -0.4 1,669,073 + Dsui_1588 0.17 -1.4 1,669,146 + Dsui_1588 0.25 -1.2 1,669,176 + Dsui_1588 0.28 -1.1 1,669,184 + Dsui_1588 0.29 -1.7 1,669,192 - -1.0 1,669,240 - Dsui_1588 0.34 +1.6 1,669,261 + Dsui_1588 0.36 +0.3 1,669,332 - Dsui_1588 0.43 -1.7 1,669,469 + Dsui_1588 0.57 -0.7 1,669,525 + Dsui_1588 0.63 -1.2 1,669,525 + Dsui_1588 0.63 -0.9 1,669,525 + Dsui_1588 0.63 -1.2 1,669,525 + Dsui_1588 0.63 -0.1 1,669,533 - -0.4 1,669,533 - +0.6 1,669,610 - Dsui_1588 0.71 +0.6 1,669,790 + Dsui_1588 0.89 -0.3 1,669,884 + +0.0 1,669,961 + -2.2 1,670,068 - Dsui_1589 0.25 +0.6 1,670,075 + Dsui_1589 0.26 -1.6 1,670,110 - -1.0 1,670,186 + Dsui_1589 0.42 -1.7 1,670,238 + Dsui_1589 0.50 -1.2 1,670,479 + Dsui_1589 0.85 -1.3 1,670,483 + Dsui_1589 0.85 -1.4 1,670,500 + Dsui_1589 0.88 -3.1 1,670,576 + -0.9 1,670,807 - +0.6 1,670,814 + Dsui_1590 0.80 +0.3 1,670,819 + Dsui_1590 0.82 -0.2 1,670,819 + Dsui_1590 0.82 +0.9 1,670,850 + -0.9 1,670,850 + -0.2 1,670,850 + -0.5 1,670,858 - -1.7 1,670,858 - -0.4 1,670,914 - -0.6 1,671,246 + Dsui_1591 0.20 +0.6 1,671,555 + Dsui_1591 0.44 -1.7 1,671,555 + Dsui_1591 0.44 -0.4
Or see this region's nucleotide sequence