Strain Fitness in Dechlorosoma suillum PS around Dsui_1587

Experiment: ALP with Cisplatin 0.0008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1586 and Dsui_1587 overlap by 1 nucleotidesDsui_1587 and Dsui_1588 are separated by 112 nucleotides Dsui_1586: Dsui_1586 - parvulin-like peptidyl-prolyl isomerase, at 1,664,176 to 1,665,489 _1586 Dsui_1587: Dsui_1587 - organic solvent tolerance protein OstA, at 1,665,489 to 1,668,785 _1587 Dsui_1588: Dsui_1588 - aminoglycoside phosphotransferase, at 1,668,898 to 1,669,899 _1588 Position (kb) 1665 1666 1667 1668 1669Strain fitness (log2 ratio) -2 -1 0 1at 1665.499 kb on + strandat 1665.517 kb on + strandat 1665.525 kb on - strandat 1668.836 kb on - strandat 1668.916 kb on + strandat 1668.921 kb on + strandat 1669.060 kb on + strand, within Dsui_1588at 1669.073 kb on + strand, within Dsui_1588at 1669.146 kb on + strand, within Dsui_1588at 1669.176 kb on + strand, within Dsui_1588at 1669.184 kb on + strand, within Dsui_1588at 1669.192 kb on - strandat 1669.240 kb on - strand, within Dsui_1588at 1669.261 kb on + strand, within Dsui_1588at 1669.332 kb on - strand, within Dsui_1588at 1669.469 kb on + strand, within Dsui_1588at 1669.525 kb on + strand, within Dsui_1588at 1669.525 kb on + strand, within Dsui_1588at 1669.525 kb on + strand, within Dsui_1588at 1669.525 kb on + strand, within Dsui_1588at 1669.533 kb on - strandat 1669.533 kb on - strandat 1669.610 kb on - strand, within Dsui_1588

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml
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1,665,499 + +0.6
1,665,517 + -2.4
1,665,525 - -0.8
1,668,836 - -0.3
1,668,916 + -1.1
1,668,921 + -0.9
1,669,060 + Dsui_1588 0.16 -0.4
1,669,073 + Dsui_1588 0.17 -1.4
1,669,146 + Dsui_1588 0.25 -1.2
1,669,176 + Dsui_1588 0.28 -1.1
1,669,184 + Dsui_1588 0.29 -1.7
1,669,192 - -1.0
1,669,240 - Dsui_1588 0.34 +1.6
1,669,261 + Dsui_1588 0.36 +0.3
1,669,332 - Dsui_1588 0.43 -1.7
1,669,469 + Dsui_1588 0.57 -0.7
1,669,525 + Dsui_1588 0.63 -1.2
1,669,525 + Dsui_1588 0.63 -0.9
1,669,525 + Dsui_1588 0.63 -1.2
1,669,525 + Dsui_1588 0.63 -0.1
1,669,533 - -0.4
1,669,533 - +0.6
1,669,610 - Dsui_1588 0.71 +0.6

Or see this region's nucleotide sequence