Strain Fitness in Dechlorosoma suillum PS around Dsui_1556

Experiment: ALP with Cisplatin 0.0008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1555 and Dsui_1556 are separated by 6 nucleotidesDsui_1556 and Dsui_1557 are separated by 199 nucleotides Dsui_1555: Dsui_1555 - cation/multidrug efflux pump, at 1,619,716 to 1,622,787 _1555 Dsui_1556: Dsui_1556 - RND family efflux transporter, MFP subunit, at 1,622,794 to 1,623,990 _1556 Dsui_1557: Dsui_1557 - 3-phosphoglycerate kinase, at 1,624,190 to 1,625,374 _1557 Position (kb) 1622 1623 1624Strain fitness (log2 ratio) -3 -2 -1 0 1at 1621.903 kb on - strand, within Dsui_1555at 1621.905 kb on + strand, within Dsui_1555at 1622.093 kb on + strand, within Dsui_1555at 1622.093 kb on + strand, within Dsui_1555at 1622.101 kb on - strand, within Dsui_1555at 1622.101 kb on - strand, within Dsui_1555at 1622.474 kb on - strand, within Dsui_1555at 1622.584 kb on + strandat 1622.696 kb on - strandat 1622.735 kb on - strandat 1622.759 kb on - strandat 1623.043 kb on - strand, within Dsui_1556at 1623.171 kb on + strand, within Dsui_1556at 1623.171 kb on + strand, within Dsui_1556at 1623.348 kb on + strandat 1623.507 kb on + strand, within Dsui_1556at 1623.551 kb on - strand, within Dsui_1556at 1623.605 kb on + strand, within Dsui_1556at 1623.611 kb on + strand, within Dsui_1556at 1623.652 kb on - strand, within Dsui_1556at 1623.679 kb on - strand, within Dsui_1556at 1623.709 kb on + strand, within Dsui_1556at 1624.103 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml
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1,621,903 - Dsui_1555 0.71 -0.7
1,621,905 + Dsui_1555 0.71 +0.7
1,622,093 + Dsui_1555 0.77 -0.9
1,622,093 + Dsui_1555 0.77 -0.9
1,622,101 - Dsui_1555 0.78 -0.7
1,622,101 - Dsui_1555 0.78 +0.9
1,622,474 - Dsui_1555 0.90 -0.6
1,622,584 + -0.6
1,622,696 - -1.2
1,622,735 - +0.8
1,622,759 - +0.7
1,623,043 - Dsui_1556 0.21 -1.0
1,623,171 + Dsui_1556 0.31 -0.3
1,623,171 + Dsui_1556 0.31 -2.3
1,623,348 + +0.7
1,623,507 + Dsui_1556 0.60 +0.7
1,623,551 - Dsui_1556 0.63 -0.4
1,623,605 + Dsui_1556 0.68 -0.9
1,623,611 + Dsui_1556 0.68 -0.3
1,623,652 - Dsui_1556 0.72 +0.3
1,623,679 - Dsui_1556 0.74 -0.3
1,623,709 + Dsui_1556 0.76 -2.8
1,624,103 + -0.3

Or see this region's nucleotide sequence