Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1494 and Dsui_1495 are separated by 78 nucleotides Dsui_1495 and Dsui_1496 are separated by 22 nucleotides Dsui_1496 and Dsui_1497 are separated by 102 nucleotides
Dsui_1494: Dsui_1494 - ATP-dependent metalloprotease FtsH, at 1,557,905 to 1,559,734
_1494
Dsui_1495: Dsui_1495 - molecular chaperone (small heat shock protein), at 1,559,813 to 1,560,271
_1495
Dsui_1496: Dsui_1496 - YfdX protein, at 1,560,294 to 1,561,208
_1496
Dsui_1497: Dsui_1497 - YfdX protein, at 1,561,311 to 1,562,198
_1497
Position (kb)
1560
1561
1562 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1559.543 kb on + strand, within Dsui_1494 at 1559.743 kb on + strand at 1559.748 kb on + strand at 1559.769 kb on - strand at 1559.994 kb on + strand, within Dsui_1495 at 1560.170 kb on - strand, within Dsui_1495 at 1560.220 kb on + strand, within Dsui_1495 at 1560.228 kb on - strand at 1560.228 kb on - strand at 1560.292 kb on - strand at 1560.306 kb on - strand at 1560.308 kb on + strand at 1560.326 kb on - strand at 1560.366 kb on + strand at 1560.366 kb on + strand at 1560.374 kb on - strand at 1560.374 kb on - strand at 1560.374 kb on - strand at 1560.420 kb on - strand, within Dsui_1496 at 1560.557 kb on + strand, within Dsui_1496 at 1560.657 kb on - strand, within Dsui_1496 at 1560.657 kb on - strand, within Dsui_1496 at 1560.691 kb on - strand, within Dsui_1496 at 1560.728 kb on + strand, within Dsui_1496 at 1560.889 kb on - strand, within Dsui_1496 at 1560.911 kb on + strand, within Dsui_1496 at 1560.915 kb on - strand, within Dsui_1496 at 1561.020 kb on + strand, within Dsui_1496 at 1561.022 kb on + strand, within Dsui_1496 at 1561.022 kb on + strand, within Dsui_1496 at 1561.022 kb on + strand, within Dsui_1496 at 1561.030 kb on - strand, within Dsui_1496 at 1561.061 kb on - strand, within Dsui_1496 at 1561.070 kb on + strand, within Dsui_1496 at 1561.078 kb on - strand, within Dsui_1496 at 1561.078 kb on - strand, within Dsui_1496 at 1561.091 kb on + strand, within Dsui_1496 at 1561.126 kb on - strand at 1561.168 kb on + strand at 1561.241 kb on + strand at 1561.390 kb on + strand at 1561.402 kb on + strand, within Dsui_1497 at 1561.403 kb on + strand, within Dsui_1497 at 1561.405 kb on - strand, within Dsui_1497 at 1561.410 kb on - strand, within Dsui_1497 at 1561.411 kb on - strand, within Dsui_1497 at 1561.429 kb on - strand, within Dsui_1497 at 1561.556 kb on + strand, within Dsui_1497 at 1561.562 kb on + strand, within Dsui_1497 at 1561.596 kb on - strand, within Dsui_1497 at 1561.618 kb on + strand, within Dsui_1497 at 1561.633 kb on + strand, within Dsui_1497 at 1561.656 kb on - strand, within Dsui_1497 at 1561.722 kb on - strand, within Dsui_1497 at 1561.855 kb on + strand, within Dsui_1497 at 1562.030 kb on - strand, within Dsui_1497 at 1562.053 kb on + strand, within Dsui_1497 at 1562.069 kb on - strand, within Dsui_1497 at 1562.096 kb on + strand, within Dsui_1497 at 1562.109 kb on - strand, within Dsui_1497 at 1562.173 kb on + strand at 1562.201 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 1,559,543 + Dsui_1494 0.90 -0.6 1,559,743 + -0.3 1,559,748 + -2.3 1,559,769 - -0.3 1,559,994 + Dsui_1495 0.39 -0.3 1,560,170 - Dsui_1495 0.78 -0.3 1,560,220 + Dsui_1495 0.89 +0.7 1,560,228 - -0.3 1,560,228 - +0.7 1,560,292 - -2.7 1,560,306 - -1.3 1,560,308 + -1.6 1,560,326 - -1.8 1,560,366 + +0.7 1,560,366 + -0.8 1,560,374 - -0.8 1,560,374 - -0.3 1,560,374 - -0.8 1,560,420 - Dsui_1496 0.14 -0.3 1,560,557 + Dsui_1496 0.29 +2.7 1,560,657 - Dsui_1496 0.40 -0.3 1,560,657 - Dsui_1496 0.40 +0.7 1,560,691 - Dsui_1496 0.43 +0.7 1,560,728 + Dsui_1496 0.47 -0.3 1,560,889 - Dsui_1496 0.65 -1.3 1,560,911 + Dsui_1496 0.67 +0.9 1,560,915 - Dsui_1496 0.68 -0.3 1,561,020 + Dsui_1496 0.79 +0.2 1,561,022 + Dsui_1496 0.80 +1.5 1,561,022 + Dsui_1496 0.80 -0.3 1,561,022 + Dsui_1496 0.80 -0.8 1,561,030 - Dsui_1496 0.80 -0.3 1,561,061 - Dsui_1496 0.84 +0.7 1,561,070 + Dsui_1496 0.85 -1.6 1,561,078 - Dsui_1496 0.86 -0.3 1,561,078 - Dsui_1496 0.86 -0.3 1,561,091 + Dsui_1496 0.87 +0.2 1,561,126 - +0.7 1,561,168 + -0.3 1,561,241 + -1.8 1,561,390 + +0.2 1,561,402 + Dsui_1497 0.10 -2.4 1,561,403 + Dsui_1497 0.10 -0.7 1,561,405 - Dsui_1497 0.11 +0.8 1,561,410 - Dsui_1497 0.11 -1.2 1,561,411 - Dsui_1497 0.11 -1.2 1,561,429 - Dsui_1497 0.13 -1.2 1,561,556 + Dsui_1497 0.28 -0.4 1,561,562 + Dsui_1497 0.28 -0.5 1,561,596 - Dsui_1497 0.32 +0.8 1,561,618 + Dsui_1497 0.35 -1.1 1,561,633 + Dsui_1497 0.36 +1.0 1,561,656 - Dsui_1497 0.39 -0.8 1,561,722 - Dsui_1497 0.46 +0.8 1,561,855 + Dsui_1497 0.61 -0.8 1,562,030 - Dsui_1497 0.81 -1.6 1,562,053 + Dsui_1497 0.84 +0.8 1,562,069 - Dsui_1497 0.85 -0.2 1,562,096 + Dsui_1497 0.88 -2.5 1,562,109 - Dsui_1497 0.90 +0.8 1,562,173 + -0.6 1,562,201 + -0.6
Or see this region's nucleotide sequence