Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1452 and Dsui_1453 are separated by 13 nucleotides Dsui_1453 and Dsui_1454 are separated by 7 nucleotides Dsui_1454 and Dsui_1455 overlap by 1 nucleotides
Dsui_1452: Dsui_1452 - putative transmembrane sensor domain protein, at 1,508,637 to 1,510,850
_1452
Dsui_1453: Dsui_1453 - metal-dependent hydrolase, beta-lactamase superfamily III, at 1,510,864 to 1,511,637
_1453
Dsui_1454: Dsui_1454 - Rhodanese-like protein,cyclic nucleotide-binding protein, at 1,511,645 to 1,512,727
_1454
Dsui_1455: Dsui_1455 - type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 1,512,727 to 1,515,093
_1455
Position (kb)
1511
1512
1513 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1510.682 kb on - strand at 1510.922 kb on + strand at 1510.922 kb on + strand at 1510.930 kb on - strand at 1510.930 kb on - strand at 1510.930 kb on - strand at 1511.021 kb on + strand, within Dsui_1453 at 1511.104 kb on + strand, within Dsui_1453 at 1511.190 kb on - strand at 1511.237 kb on + strand, within Dsui_1453 at 1511.237 kb on + strand, within Dsui_1453 at 1511.281 kb on + strand, within Dsui_1453 at 1511.380 kb on - strand, within Dsui_1453 at 1511.442 kb on + strand, within Dsui_1453 at 1511.474 kb on - strand, within Dsui_1453 at 1511.535 kb on + strand, within Dsui_1453 at 1511.630 kb on - strand at 1511.666 kb on + strand at 1511.934 kb on + strand, within Dsui_1454 at 1512.191 kb on - strand at 1512.438 kb on - strand at 1512.444 kb on + strand, within Dsui_1454 at 1512.499 kb on - strand at 1512.509 kb on - strand, within Dsui_1454 at 1512.650 kb on - strand at 1512.747 kb on - strand at 1512.862 kb on - strand at 1512.900 kb on + strand at 1512.904 kb on + strand at 1512.914 kb on - strand at 1512.927 kb on + strand at 1512.992 kb on + strand, within Dsui_1455 at 1513.002 kb on + strand, within Dsui_1455 at 1513.062 kb on - strand, within Dsui_1455 at 1513.092 kb on + strand, within Dsui_1455 at 1513.392 kb on + strand, within Dsui_1455 at 1513.442 kb on + strand, within Dsui_1455 at 1513.520 kb on - strand, within Dsui_1455 at 1513.606 kb on - strand, within Dsui_1455 at 1513.686 kb on - strand, within Dsui_1455
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 1,510,682 - +0.7 1,510,922 + -3.0 1,510,922 + -1.6 1,510,930 - -0.3 1,510,930 - -0.3 1,510,930 - -1.3 1,511,021 + Dsui_1453 0.20 -1.3 1,511,104 + Dsui_1453 0.31 -1.9 1,511,190 - +0.7 1,511,237 + Dsui_1453 0.48 -1.8 1,511,237 + Dsui_1453 0.48 -0.9 1,511,281 + Dsui_1453 0.54 -3.0 1,511,380 - Dsui_1453 0.67 +0.7 1,511,442 + Dsui_1453 0.75 +1.5 1,511,474 - Dsui_1453 0.79 +0.7 1,511,535 + Dsui_1453 0.87 -2.0 1,511,630 - +0.7 1,511,666 + -1.0 1,511,934 + Dsui_1454 0.27 -2.1 1,512,191 - +0.7 1,512,438 - +0.7 1,512,444 + Dsui_1454 0.74 -1.3 1,512,499 - +0.7 1,512,509 - Dsui_1454 0.80 -0.3 1,512,650 - +0.7 1,512,747 - -0.9 1,512,862 - -0.9 1,512,900 + -0.4 1,512,904 + +0.8 1,512,914 - +0.7 1,512,927 + -0.3 1,512,992 + Dsui_1455 0.11 +0.7 1,513,002 + Dsui_1455 0.12 -0.3 1,513,062 - Dsui_1455 0.14 +0.7 1,513,092 + Dsui_1455 0.15 -0.6 1,513,392 + Dsui_1455 0.28 +0.7 1,513,442 + Dsui_1455 0.30 -2.1 1,513,520 - Dsui_1455 0.34 -2.6 1,513,606 - Dsui_1455 0.37 -0.3 1,513,686 - Dsui_1455 0.41 -0.3
Or see this region's nucleotide sequence