Strain Fitness in Dechlorosoma suillum PS around Dsui_1316

Experiment: ALP with Cisplatin 0.0008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1315 and Dsui_1316 are separated by 30 nucleotidesDsui_1316 and Dsui_1317 overlap by 22 nucleotidesDsui_1317 and Dsui_1318 are separated by 98 nucleotides Dsui_1315: Dsui_1315 - aspartyl-tRNA synthetase, at 1,373,574 to 1,375,373 _1315 Dsui_1316: Dsui_1316 - hypothetical protein, at 1,375,404 to 1,376,045 _1316 Dsui_1317: Dsui_1317 - putative regulatory protein, FmdB family, at 1,376,024 to 1,376,296 _1317 Dsui_1318: Dsui_1318 - prepilin signal peptidase PulO-like peptidase, at 1,376,395 to 1,377,249 _1318 Position (kb) 1375 1376 1377Strain fitness (log2 ratio) -3 -2 -1 0 1at 1375.453 kb on - strandat 1375.480 kb on - strand, within Dsui_1316at 1375.481 kb on - strand, within Dsui_1316at 1375.678 kb on - strand, within Dsui_1316at 1375.720 kb on - strand, within Dsui_1316at 1375.956 kb on - strand, within Dsui_1316at 1376.156 kb on - strand, within Dsui_1317at 1376.339 kb on + strandat 1376.339 kb on + strandat 1376.339 kb on + strandat 1376.339 kb on + strandat 1376.339 kb on + strandat 1376.339 kb on + strandat 1376.347 kb on - strandat 1376.347 kb on - strandat 1376.347 kb on - strandat 1376.347 kb on - strandat 1376.347 kb on - strandat 1376.349 kb on + strandat 1376.401 kb on - strandat 1376.421 kb on - strandat 1376.432 kb on + strandat 1376.437 kb on + strandat 1376.537 kb on + strand, within Dsui_1318at 1376.549 kb on - strand, within Dsui_1318at 1376.564 kb on + strand, within Dsui_1318at 1376.571 kb on - strand, within Dsui_1318at 1376.637 kb on - strand, within Dsui_1318at 1376.682 kb on + strand, within Dsui_1318at 1376.720 kb on - strand, within Dsui_1318at 1376.770 kb on - strand, within Dsui_1318at 1376.780 kb on - strand, within Dsui_1318at 1376.840 kb on - strand, within Dsui_1318at 1376.905 kb on + strand, within Dsui_1318at 1376.992 kb on + strand, within Dsui_1318

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml
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1,375,453 - -0.5
1,375,480 - Dsui_1316 0.12 -2.2
1,375,481 - Dsui_1316 0.12 -1.9
1,375,678 - Dsui_1316 0.43 -1.8
1,375,720 - Dsui_1316 0.49 -3.1
1,375,956 - Dsui_1316 0.86 -3.2
1,376,156 - Dsui_1317 0.48 -2.9
1,376,339 + +0.6
1,376,339 + -0.4
1,376,339 + -2.2
1,376,339 + -2.4
1,376,339 + +0.6
1,376,339 + -2.0
1,376,347 - +0.1
1,376,347 - -1.1
1,376,347 - +0.1
1,376,347 - -1.0
1,376,347 - +0.2
1,376,349 + +0.6
1,376,401 - -1.4
1,376,421 - -0.4
1,376,432 + -1.7
1,376,437 + -2.0
1,376,537 + Dsui_1318 0.17 -0.4
1,376,549 - Dsui_1318 0.18 -0.8
1,376,564 + Dsui_1318 0.20 +0.6
1,376,571 - Dsui_1318 0.21 +0.2
1,376,637 - Dsui_1318 0.28 -0.5
1,376,682 + Dsui_1318 0.34 -0.4
1,376,720 - Dsui_1318 0.38 -1.7
1,376,770 - Dsui_1318 0.44 -2.2
1,376,780 - Dsui_1318 0.45 -1.4
1,376,840 - Dsui_1318 0.52 +0.4
1,376,905 + Dsui_1318 0.60 -1.0
1,376,992 + Dsui_1318 0.70 -1.0

Or see this region's nucleotide sequence