Strain Fitness in Dechlorosoma suillum PS around Dsui_1129

Experiment: ALP with Cisplatin 0.0008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_1128 and Dsui_1129 overlap by 4 nucleotidesDsui_1129 and Dsui_1130 are separated by 10 nucleotides Dsui_1128: Dsui_1128 - outer membrane protein, at 1,179,635 to 1,180,885 _1128 Dsui_1129: Dsui_1129 - acetyl/propionyl-CoA carboxylase, alpha subunit, at 1,180,882 to 1,182,114 _1129 Dsui_1130: Dsui_1130 - heavy metal efflux pump, cobalt-zinc-cadmium, at 1,182,125 to 1,185,283 _1130 Position (kb) 1180 1181 1182 1183Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1179.921 kb on + strand, within Dsui_1128at 1179.921 kb on + strand, within Dsui_1128at 1179.991 kb on - strand, within Dsui_1128at 1180.002 kb on - strand, within Dsui_1128at 1180.016 kb on - strand, within Dsui_1128at 1180.044 kb on + strand, within Dsui_1128at 1180.207 kb on + strand, within Dsui_1128at 1180.215 kb on - strand, within Dsui_1128at 1180.215 kb on - strand, within Dsui_1128at 1180.239 kb on + strand, within Dsui_1128at 1180.247 kb on - strand, within Dsui_1128at 1180.247 kb on - strand, within Dsui_1128at 1180.251 kb on - strand, within Dsui_1128at 1180.252 kb on - strand, within Dsui_1128at 1180.257 kb on + strand, within Dsui_1128at 1180.320 kb on - strand, within Dsui_1128at 1180.335 kb on + strand, within Dsui_1128at 1180.336 kb on - strand, within Dsui_1128at 1180.359 kb on + strand, within Dsui_1128at 1180.359 kb on + strand, within Dsui_1128at 1180.367 kb on - strand, within Dsui_1128at 1180.436 kb on - strand, within Dsui_1128at 1180.475 kb on - strand, within Dsui_1128at 1180.476 kb on - strand, within Dsui_1128at 1180.562 kb on + strand, within Dsui_1128at 1180.575 kb on + strand, within Dsui_1128at 1180.622 kb on - strand, within Dsui_1128at 1180.624 kb on + strand, within Dsui_1128at 1180.659 kb on - strand, within Dsui_1128at 1180.659 kb on - strand, within Dsui_1128at 1180.659 kb on - strand, within Dsui_1128at 1180.671 kb on - strand, within Dsui_1128at 1180.672 kb on - strand, within Dsui_1128at 1180.690 kb on + strand, within Dsui_1128at 1180.720 kb on - strand, within Dsui_1128at 1180.720 kb on - strand, within Dsui_1128at 1180.721 kb on - strand, within Dsui_1128at 1180.737 kb on - strand, within Dsui_1128at 1180.852 kb on + strandat 1180.874 kb on - strandat 1180.875 kb on - strandat 1181.138 kb on + strand, within Dsui_1129at 1181.216 kb on + strand, within Dsui_1129at 1181.302 kb on + strand, within Dsui_1129at 1181.357 kb on - strand, within Dsui_1129at 1181.413 kb on - strand, within Dsui_1129at 1181.541 kb on + strand, within Dsui_1129at 1181.547 kb on + strand, within Dsui_1129at 1181.552 kb on + strand, within Dsui_1129at 1181.621 kb on + strand, within Dsui_1129at 1181.963 kb on + strand, within Dsui_1129at 1181.971 kb on - strand, within Dsui_1129at 1181.978 kb on + strand, within Dsui_1129at 1182.182 kb on + strandat 1182.192 kb on + strandat 1182.237 kb on - strandat 1182.296 kb on + strandat 1182.361 kb on + strandat 1182.362 kb on + strandat 1182.364 kb on - strandat 1182.402 kb on - strandat 1182.525 kb on - strand, within Dsui_1130at 1182.527 kb on + strand, within Dsui_1130at 1182.530 kb on - strand, within Dsui_1130at 1182.541 kb on - strand, within Dsui_1130at 1182.554 kb on + strand, within Dsui_1130at 1182.564 kb on + strand, within Dsui_1130at 1182.564 kb on + strand, within Dsui_1130at 1182.572 kb on - strand, within Dsui_1130at 1182.620 kb on + strand, within Dsui_1130at 1182.620 kb on + strand, within Dsui_1130at 1182.620 kb on + strand, within Dsui_1130at 1182.620 kb on + strand, within Dsui_1130at 1182.671 kb on - strand, within Dsui_1130at 1182.681 kb on - strand, within Dsui_1130at 1182.711 kb on - strand, within Dsui_1130at 1182.714 kb on + strand, within Dsui_1130at 1182.722 kb on - strand, within Dsui_1130at 1182.745 kb on - strand, within Dsui_1130at 1182.763 kb on + strand, within Dsui_1130at 1182.829 kb on - strand, within Dsui_1130at 1182.945 kb on + strand, within Dsui_1130at 1182.953 kb on - strand, within Dsui_1130at 1182.953 kb on - strand, within Dsui_1130at 1182.968 kb on - strand, within Dsui_1130at 1182.971 kb on + strand, within Dsui_1130at 1183.055 kb on + strand, within Dsui_1130at 1183.088 kb on + strand, within Dsui_1130at 1183.092 kb on + strand, within Dsui_1130at 1183.100 kb on - strand, within Dsui_1130at 1183.109 kb on + strand, within Dsui_1130

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml
remove
1,179,921 + Dsui_1128 0.23 -1.4
1,179,921 + Dsui_1128 0.23 +0.6
1,179,991 - Dsui_1128 0.28 -1.4
1,180,002 - Dsui_1128 0.29 -0.4
1,180,016 - Dsui_1128 0.30 -1.0
1,180,044 + Dsui_1128 0.33 +0.1
1,180,207 + Dsui_1128 0.46 -0.4
1,180,215 - Dsui_1128 0.46 +2.2
1,180,215 - Dsui_1128 0.46 -1.4
1,180,239 + Dsui_1128 0.48 -0.4
1,180,247 - Dsui_1128 0.49 +0.6
1,180,247 - Dsui_1128 0.49 -0.8
1,180,251 - Dsui_1128 0.49 -3.3
1,180,252 - Dsui_1128 0.49 -1.4
1,180,257 + Dsui_1128 0.50 +0.6
1,180,320 - Dsui_1128 0.55 -0.0
1,180,335 + Dsui_1128 0.56 +0.6
1,180,336 - Dsui_1128 0.56 +1.6
1,180,359 + Dsui_1128 0.58 +0.6
1,180,359 + Dsui_1128 0.58 -1.0
1,180,367 - Dsui_1128 0.59 -2.2
1,180,436 - Dsui_1128 0.64 -0.4
1,180,475 - Dsui_1128 0.67 -1.0
1,180,476 - Dsui_1128 0.67 +0.6
1,180,562 + Dsui_1128 0.74 +0.2
1,180,575 + Dsui_1128 0.75 -0.7
1,180,622 - Dsui_1128 0.79 +0.6
1,180,624 + Dsui_1128 0.79 -0.4
1,180,659 - Dsui_1128 0.82 -0.4
1,180,659 - Dsui_1128 0.82 -1.8
1,180,659 - Dsui_1128 0.82 -1.4
1,180,671 - Dsui_1128 0.83 -0.4
1,180,672 - Dsui_1128 0.83 -0.4
1,180,690 + Dsui_1128 0.84 +0.8
1,180,720 - Dsui_1128 0.87 +0.6
1,180,720 - Dsui_1128 0.87 -0.4
1,180,721 - Dsui_1128 0.87 -0.4
1,180,737 - Dsui_1128 0.88 -1.0
1,180,852 + +0.6
1,180,874 - -2.2
1,180,875 - -1.0
1,181,138 + Dsui_1129 0.21 -0.4
1,181,216 + Dsui_1129 0.27 -3.3
1,181,302 + Dsui_1129 0.34 +0.6
1,181,357 - Dsui_1129 0.39 -1.8
1,181,413 - Dsui_1129 0.43 -0.4
1,181,541 + Dsui_1129 0.53 +0.6
1,181,547 + Dsui_1129 0.54 +0.6
1,181,552 + Dsui_1129 0.54 -3.0
1,181,621 + Dsui_1129 0.60 -1.0
1,181,963 + Dsui_1129 0.88 +0.6
1,181,971 - Dsui_1129 0.88 +0.6
1,181,978 + Dsui_1129 0.89 +0.6
1,182,182 + -2.0
1,182,192 + -1.4
1,182,237 - -1.0
1,182,296 + +2.2
1,182,361 + -0.4
1,182,362 + -1.2
1,182,364 - -0.4
1,182,402 - -1.4
1,182,525 - Dsui_1130 0.13 +0.6
1,182,527 + Dsui_1130 0.13 -0.4
1,182,530 - Dsui_1130 0.13 -1.4
1,182,541 - Dsui_1130 0.13 +0.6
1,182,554 + Dsui_1130 0.14 -1.0
1,182,564 + Dsui_1130 0.14 -2.1
1,182,564 + Dsui_1130 0.14 +0.3
1,182,572 - Dsui_1130 0.14 +0.6
1,182,620 + Dsui_1130 0.16 +0.6
1,182,620 + Dsui_1130 0.16 -2.2
1,182,620 + Dsui_1130 0.16 -2.2
1,182,620 + Dsui_1130 0.16 +2.2
1,182,671 - Dsui_1130 0.17 -1.8
1,182,681 - Dsui_1130 0.18 +0.6
1,182,711 - Dsui_1130 0.19 -1.4
1,182,714 + Dsui_1130 0.19 -1.6
1,182,722 - Dsui_1130 0.19 +0.6
1,182,745 - Dsui_1130 0.20 -0.4
1,182,763 + Dsui_1130 0.20 -1.4
1,182,829 - Dsui_1130 0.22 -2.6
1,182,945 + Dsui_1130 0.26 +0.6
1,182,953 - Dsui_1130 0.26 +0.6
1,182,953 - Dsui_1130 0.26 +0.6
1,182,968 - Dsui_1130 0.27 -2.8
1,182,971 + Dsui_1130 0.27 -1.4
1,183,055 + Dsui_1130 0.29 -0.2
1,183,088 + Dsui_1130 0.30 -1.0
1,183,092 + Dsui_1130 0.31 -1.8
1,183,100 - Dsui_1130 0.31 +0.6
1,183,109 + Dsui_1130 0.31 +0.6

Or see this region's nucleotide sequence