Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1123 and Dsui_1124 are separated by 49 nucleotides Dsui_1124 and Dsui_1125 are separated by 61 nucleotides Dsui_1125 and Dsui_1126 are separated by 608 nucleotides
Dsui_1123: Dsui_1123 - methyl-accepting chemotaxis protein, at 1,171,228 to 1,172,841
_1123
Dsui_1124: Dsui_1124 - prolipoprotein diacylglyceryl transferase, at 1,172,891 to 1,173,676
_1124
Dsui_1125: Dsui_1125 - Malonyl-CoA decarboxylase (MCD), at 1,173,738 to 1,175,066
_1125
Dsui_1126: Dsui_1126 - outer membrane receptor protein, at 1,175,675 to 1,177,576
_1126
Position (kb)
1173
1174
1175
1176 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1172.799 kb on + strand at 1172.799 kb on + strand at 1172.807 kb on - strand at 1172.863 kb on + strand at 1173.702 kb on - strand at 1173.807 kb on + strand at 1173.820 kb on + strand at 1173.859 kb on - strand at 1174.509 kb on - strand, within Dsui_1125 at 1174.510 kb on - strand, within Dsui_1125 at 1174.586 kb on + strand, within Dsui_1125 at 1174.594 kb on - strand, within Dsui_1125 at 1174.604 kb on + strand, within Dsui_1125 at 1174.621 kb on + strand, within Dsui_1125 at 1174.621 kb on + strand, within Dsui_1125 at 1174.629 kb on - strand, within Dsui_1125 at 1174.680 kb on - strand, within Dsui_1125 at 1174.867 kb on + strand, within Dsui_1125 at 1174.943 kb on + strand at 1174.951 kb on + strand at 1174.951 kb on - strand at 1174.951 kb on - strand at 1175.050 kb on - strand at 1175.050 kb on - strand at 1175.124 kb on - strand at 1175.140 kb on + strand at 1175.157 kb on + strand at 1175.182 kb on + strand at 1175.183 kb on + strand at 1175.238 kb on + strand at 1175.246 kb on - strand at 1175.274 kb on + strand at 1175.279 kb on + strand at 1175.279 kb on - strand at 1175.279 kb on - strand at 1175.281 kb on + strand at 1175.314 kb on + strand at 1175.339 kb on - strand at 1175.345 kb on + strand at 1175.353 kb on - strand at 1175.377 kb on + strand at 1175.460 kb on + strand at 1175.476 kb on - strand at 1175.480 kb on - strand at 1175.486 kb on - strand at 1175.488 kb on + strand at 1175.519 kb on - strand at 1175.596 kb on - strand at 1175.601 kb on - strand at 1175.634 kb on + strand at 1175.634 kb on + strand at 1175.644 kb on + strand at 1175.652 kb on - strand at 1175.652 kb on - strand at 1175.686 kb on + strand at 1175.821 kb on + strand at 1175.863 kb on + strand at 1175.871 kb on - strand, within Dsui_1126 at 1175.962 kb on + strand, within Dsui_1126 at 1175.969 kb on + strand, within Dsui_1126 at 1175.999 kb on + strand, within Dsui_1126 at 1176.054 kb on + strand, within Dsui_1126
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 1,172,799 + -1.0 1,172,799 + -0.1 1,172,807 - -0.4 1,172,863 + -0.2 1,173,702 - +0.6 1,173,807 + -0.5 1,173,820 + -0.5 1,173,859 - -1.0 1,174,509 - Dsui_1125 0.58 -1.0 1,174,510 - Dsui_1125 0.58 -0.4 1,174,586 + Dsui_1125 0.64 +2.6 1,174,594 - Dsui_1125 0.64 +0.6 1,174,604 + Dsui_1125 0.65 -0.7 1,174,621 + Dsui_1125 0.66 +0.2 1,174,621 + Dsui_1125 0.66 +0.3 1,174,629 - Dsui_1125 0.67 -1.8 1,174,680 - Dsui_1125 0.71 +0.6 1,174,867 + Dsui_1125 0.85 +1.0 1,174,943 + -0.7 1,174,951 + -0.3 1,174,951 - -1.0 1,174,951 - -1.0 1,175,050 - -0.4 1,175,050 - +0.6 1,175,124 - -1.8 1,175,140 + -0.2 1,175,157 + -0.7 1,175,182 + -0.2 1,175,183 + -1.4 1,175,238 + -0.4 1,175,246 - -1.8 1,175,274 + +0.2 1,175,279 + +1.1 1,175,279 - -0.4 1,175,279 - -0.4 1,175,281 + -1.2 1,175,314 + -0.4 1,175,339 - -0.4 1,175,345 + +1.6 1,175,353 - -0.4 1,175,377 + +0.6 1,175,460 + -1.2 1,175,476 - -1.8 1,175,480 - -0.4 1,175,486 - +0.6 1,175,488 + -0.8 1,175,519 - -2.0 1,175,596 - +0.6 1,175,601 - +0.6 1,175,634 + -1.0 1,175,634 + -1.4 1,175,644 + +2.2 1,175,652 - +0.6 1,175,652 - -2.0 1,175,686 + +0.2 1,175,821 + -0.4 1,175,863 + -1.2 1,175,871 - Dsui_1126 0.10 -1.0 1,175,962 + Dsui_1126 0.15 -3.3 1,175,969 + Dsui_1126 0.15 -3.7 1,175,999 + Dsui_1126 0.17 +0.6 1,176,054 + Dsui_1126 0.20 -1.0
Or see this region's nucleotide sequence