Strain Fitness in Dechlorosoma suillum PS around Dsui_1031

Experiment: ALP with Cisplatin 0.0008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1030 and Dsui_1031 are separated by 122 nucleotidesDsui_1031 and Dsui_1032 are separated by 167 nucleotides Dsui_1030: Dsui_1030 - dynamin family protein, at 1,061,620 to 1,063,575 _1030 Dsui_1031: Dsui_1031 - formamidopyrimidine-DNA glycosylase Fpg, at 1,063,698 to 1,064,525 _1031 Dsui_1032: Dsui_1032 - Flp pilus assembly protein TadD, at 1,064,693 to 1,066,432 _1032 Position (kb) 1063 1064 1065Strain fitness (log2 ratio) -3 -2 -1 0 1at 1062.725 kb on + strand, within Dsui_1030at 1062.779 kb on + strand, within Dsui_1030at 1062.820 kb on + strand, within Dsui_1030at 1062.898 kb on + strand, within Dsui_1030at 1062.938 kb on - strand, within Dsui_1030at 1063.080 kb on - strand, within Dsui_1030at 1063.130 kb on - strand, within Dsui_1030at 1063.143 kb on + strand, within Dsui_1030at 1063.318 kb on + strand, within Dsui_1030at 1063.355 kb on + strand, within Dsui_1030at 1063.365 kb on + strand, within Dsui_1030at 1063.365 kb on + strand, within Dsui_1030at 1063.365 kb on + strand, within Dsui_1030at 1063.365 kb on + strand, within Dsui_1030at 1063.373 kb on - strand, within Dsui_1030at 1063.456 kb on + strandat 1063.481 kb on - strandat 1063.508 kb on + strandat 1063.555 kb on - strandat 1063.560 kb on - strandat 1063.742 kb on + strandat 1063.750 kb on - strandat 1063.815 kb on - strand, within Dsui_1031at 1063.887 kb on + strand, within Dsui_1031at 1064.017 kb on + strand, within Dsui_1031at 1064.071 kb on + strandat 1064.089 kb on - strandat 1064.158 kb on - strand, within Dsui_1031at 1064.184 kb on - strand, within Dsui_1031at 1064.200 kb on - strand, within Dsui_1031at 1064.228 kb on + strand, within Dsui_1031at 1064.371 kb on - strand, within Dsui_1031at 1064.407 kb on + strand, within Dsui_1031at 1064.509 kb on - strandat 1064.562 kb on + strandat 1064.569 kb on - strandat 1064.587 kb on - strandat 1064.643 kb on - strandat 1064.648 kb on - strandat 1064.678 kb on - strandat 1064.777 kb on + strandat 1064.825 kb on + strandat 1065.021 kb on + strand, within Dsui_1032at 1065.162 kb on - strandat 1065.469 kb on + strand, within Dsui_1032

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml
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1,062,725 + Dsui_1030 0.56 -0.9
1,062,779 + Dsui_1030 0.59 -0.9
1,062,820 + Dsui_1030 0.61 -0.3
1,062,898 + Dsui_1030 0.65 +0.7
1,062,938 - Dsui_1030 0.67 -0.1
1,063,080 - Dsui_1030 0.75 +0.2
1,063,130 - Dsui_1030 0.77 +0.0
1,063,143 + Dsui_1030 0.78 +0.7
1,063,318 + Dsui_1030 0.87 -1.6
1,063,355 + Dsui_1030 0.89 +0.7
1,063,365 + Dsui_1030 0.89 +0.7
1,063,365 + Dsui_1030 0.89 -1.9
1,063,365 + Dsui_1030 0.89 +0.7
1,063,365 + Dsui_1030 0.89 -1.8
1,063,373 - Dsui_1030 0.90 -0.4
1,063,456 + -0.3
1,063,481 - +0.7
1,063,508 + -0.9
1,063,555 - -0.0
1,063,560 - -0.4
1,063,742 + -0.3
1,063,750 - +0.7
1,063,815 - Dsui_1031 0.14 -2.7
1,063,887 + Dsui_1031 0.23 -1.7
1,064,017 + Dsui_1031 0.39 +0.7
1,064,071 + +0.7
1,064,089 - +0.7
1,064,158 - Dsui_1031 0.56 -1.7
1,064,184 - Dsui_1031 0.59 -2.3
1,064,200 - Dsui_1031 0.61 -1.7
1,064,228 + Dsui_1031 0.64 -0.3
1,064,371 - Dsui_1031 0.81 -0.3
1,064,407 + Dsui_1031 0.86 +0.7
1,064,509 - -0.2
1,064,562 + -0.3
1,064,569 - +0.7
1,064,587 - -2.1
1,064,643 - +0.7
1,064,648 - +0.7
1,064,678 - +0.7
1,064,777 + -1.3
1,064,825 + -2.5
1,065,021 + Dsui_1032 0.19 -3.3
1,065,162 - +0.7
1,065,469 + Dsui_1032 0.45 -1.7

Or see this region's nucleotide sequence