Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1030 and Dsui_1031 are separated by 122 nucleotides Dsui_1031 and Dsui_1032 are separated by 167 nucleotides
Dsui_1030: Dsui_1030 - dynamin family protein, at 1,061,620 to 1,063,575
_1030
Dsui_1031: Dsui_1031 - formamidopyrimidine-DNA glycosylase Fpg, at 1,063,698 to 1,064,525
_1031
Dsui_1032: Dsui_1032 - Flp pilus assembly protein TadD, at 1,064,693 to 1,066,432
_1032
Position (kb)
1063
1064
1065 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1062.725 kb on + strand, within Dsui_1030 at 1062.779 kb on + strand, within Dsui_1030 at 1062.820 kb on + strand, within Dsui_1030 at 1062.898 kb on + strand, within Dsui_1030 at 1062.938 kb on - strand, within Dsui_1030 at 1063.080 kb on - strand, within Dsui_1030 at 1063.130 kb on - strand, within Dsui_1030 at 1063.143 kb on + strand, within Dsui_1030 at 1063.318 kb on + strand, within Dsui_1030 at 1063.355 kb on + strand, within Dsui_1030 at 1063.365 kb on + strand, within Dsui_1030 at 1063.365 kb on + strand, within Dsui_1030 at 1063.365 kb on + strand, within Dsui_1030 at 1063.365 kb on + strand, within Dsui_1030 at 1063.373 kb on - strand, within Dsui_1030 at 1063.456 kb on + strand at 1063.481 kb on - strand at 1063.508 kb on + strand at 1063.555 kb on - strand at 1063.560 kb on - strand at 1063.742 kb on + strand at 1063.750 kb on - strand at 1063.815 kb on - strand, within Dsui_1031 at 1063.887 kb on + strand, within Dsui_1031 at 1064.017 kb on + strand, within Dsui_1031 at 1064.071 kb on + strand at 1064.089 kb on - strand at 1064.158 kb on - strand, within Dsui_1031 at 1064.184 kb on - strand, within Dsui_1031 at 1064.200 kb on - strand, within Dsui_1031 at 1064.228 kb on + strand, within Dsui_1031 at 1064.371 kb on - strand, within Dsui_1031 at 1064.407 kb on + strand, within Dsui_1031 at 1064.509 kb on - strand at 1064.562 kb on + strand at 1064.569 kb on - strand at 1064.587 kb on - strand at 1064.643 kb on - strand at 1064.648 kb on - strand at 1064.678 kb on - strand at 1064.777 kb on + strand at 1064.825 kb on + strand at 1065.021 kb on + strand, within Dsui_1032 at 1065.162 kb on - strand at 1065.469 kb on + strand, within Dsui_1032
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 1,062,725 + Dsui_1030 0.56 -0.9 1,062,779 + Dsui_1030 0.59 -0.9 1,062,820 + Dsui_1030 0.61 -0.3 1,062,898 + Dsui_1030 0.65 +0.7 1,062,938 - Dsui_1030 0.67 -0.1 1,063,080 - Dsui_1030 0.75 +0.2 1,063,130 - Dsui_1030 0.77 +0.0 1,063,143 + Dsui_1030 0.78 +0.7 1,063,318 + Dsui_1030 0.87 -1.6 1,063,355 + Dsui_1030 0.89 +0.7 1,063,365 + Dsui_1030 0.89 +0.7 1,063,365 + Dsui_1030 0.89 -1.9 1,063,365 + Dsui_1030 0.89 +0.7 1,063,365 + Dsui_1030 0.89 -1.8 1,063,373 - Dsui_1030 0.90 -0.4 1,063,456 + -0.3 1,063,481 - +0.7 1,063,508 + -0.9 1,063,555 - -0.0 1,063,560 - -0.4 1,063,742 + -0.3 1,063,750 - +0.7 1,063,815 - Dsui_1031 0.14 -2.7 1,063,887 + Dsui_1031 0.23 -1.7 1,064,017 + Dsui_1031 0.39 +0.7 1,064,071 + +0.7 1,064,089 - +0.7 1,064,158 - Dsui_1031 0.56 -1.7 1,064,184 - Dsui_1031 0.59 -2.3 1,064,200 - Dsui_1031 0.61 -1.7 1,064,228 + Dsui_1031 0.64 -0.3 1,064,371 - Dsui_1031 0.81 -0.3 1,064,407 + Dsui_1031 0.86 +0.7 1,064,509 - -0.2 1,064,562 + -0.3 1,064,569 - +0.7 1,064,587 - -2.1 1,064,643 - +0.7 1,064,648 - +0.7 1,064,678 - +0.7 1,064,777 + -1.3 1,064,825 + -2.5 1,065,021 + Dsui_1032 0.19 -3.3 1,065,162 - +0.7 1,065,469 + Dsui_1032 0.45 -1.7
Or see this region's nucleotide sequence