Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1019 and Dsui_1021 are separated by 796 nucleotides Dsui_1021 and Dsui_1022 are separated by 208 nucleotides
Dsui_1019: Dsui_1019 - transposase, at 1,051,587 to 1,052,387
_1019
Dsui_1021: Dsui_1021 - NAD(FAD)-dependent dehydrogenase, at 1,053,184 to 1,054,518
_1021
Dsui_1022: Dsui_1022 - cell division protein, at 1,054,727 to 1,055,632
_1022
Position (kb)
1053
1054
1055 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1052.745 kb on + strand at 1052.745 kb on + strand at 1052.745 kb on + strand at 1052.753 kb on - strand at 1052.753 kb on - strand at 1052.768 kb on + strand at 1052.789 kb on + strand at 1052.792 kb on - strand at 1052.797 kb on - strand at 1052.799 kb on - strand at 1053.005 kb on + strand at 1053.009 kb on + strand at 1053.028 kb on + strand at 1053.072 kb on - strand at 1053.091 kb on + strand at 1053.099 kb on + strand at 1053.115 kb on + strand at 1053.123 kb on - strand at 1053.173 kb on - strand at 1053.175 kb on + strand at 1053.175 kb on + strand at 1053.183 kb on - strand at 1053.287 kb on + strand at 1053.464 kb on + strand, within Dsui_1021 at 1053.494 kb on - strand, within Dsui_1021 at 1053.494 kb on - strand, within Dsui_1021 at 1053.617 kb on - strand, within Dsui_1021 at 1053.697 kb on - strand, within Dsui_1021 at 1053.821 kb on - strand, within Dsui_1021 at 1053.863 kb on - strand, within Dsui_1021 at 1053.893 kb on - strand, within Dsui_1021 at 1053.989 kb on + strand, within Dsui_1021 at 1053.997 kb on - strand, within Dsui_1021 at 1054.030 kb on + strand, within Dsui_1021 at 1054.061 kb on + strand, within Dsui_1021 at 1054.134 kb on + strand, within Dsui_1021 at 1054.276 kb on - strand, within Dsui_1021 at 1054.300 kb on - strand, within Dsui_1021 at 1054.418 kb on - strand at 1054.464 kb on - strand at 1054.527 kb on + strand at 1054.598 kb on + strand at 1054.611 kb on - strand at 1054.628 kb on + strand at 1054.750 kb on + strand at 1054.758 kb on - strand at 1054.761 kb on + strand at 1054.764 kb on - strand at 1054.764 kb on - strand at 1054.774 kb on - strand at 1054.818 kb on - strand, within Dsui_1022 at 1055.044 kb on - strand, within Dsui_1022 at 1055.167 kb on - strand, within Dsui_1022 at 1055.193 kb on - strand, within Dsui_1022 at 1055.193 kb on - strand, within Dsui_1022 at 1055.235 kb on - strand, within Dsui_1022 at 1055.442 kb on - strand, within Dsui_1022 at 1055.487 kb on - strand, within Dsui_1022
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 1,052,745 + +0.7 1,052,745 + -1.3 1,052,745 + +0.7 1,052,753 - -3.0 1,052,753 - -2.3 1,052,768 + -0.9 1,052,789 + -0.6 1,052,792 - -0.8 1,052,797 - +1.3 1,052,799 - +0.7 1,053,005 + +0.5 1,053,009 + -0.3 1,053,028 + -0.7 1,053,072 - -1.3 1,053,091 + -2.5 1,053,099 + +0.7 1,053,115 + +0.5 1,053,123 - -2.5 1,053,173 - -0.1 1,053,175 + -0.3 1,053,175 + -1.6 1,053,183 - +0.4 1,053,287 + -0.9 1,053,464 + Dsui_1021 0.21 +0.7 1,053,494 - Dsui_1021 0.23 -0.3 1,053,494 - Dsui_1021 0.23 +0.0 1,053,617 - Dsui_1021 0.32 -0.3 1,053,697 - Dsui_1021 0.38 +0.0 1,053,821 - Dsui_1021 0.48 -0.2 1,053,863 - Dsui_1021 0.51 +0.3 1,053,893 - Dsui_1021 0.53 +0.6 1,053,989 + Dsui_1021 0.60 -2.8 1,053,997 - Dsui_1021 0.61 -0.5 1,054,030 + Dsui_1021 0.63 +0.1 1,054,061 + Dsui_1021 0.66 -0.9 1,054,134 + Dsui_1021 0.71 +0.7 1,054,276 - Dsui_1021 0.82 -0.1 1,054,300 - Dsui_1021 0.84 -0.4 1,054,418 - -0.4 1,054,464 - -0.2 1,054,527 + +1.0 1,054,598 + -0.3 1,054,611 - -0.3 1,054,628 + -0.3 1,054,750 + +1.7 1,054,758 - -1.0 1,054,761 + -1.3 1,054,764 - -0.4 1,054,764 - -0.3 1,054,774 - -1.4 1,054,818 - Dsui_1022 0.10 -1.3 1,055,044 - Dsui_1022 0.35 -0.7 1,055,167 - Dsui_1022 0.49 -0.8 1,055,193 - Dsui_1022 0.51 -1.1 1,055,193 - Dsui_1022 0.51 -0.9 1,055,235 - Dsui_1022 0.56 -1.0 1,055,442 - Dsui_1022 0.79 -1.3 1,055,487 - Dsui_1022 0.84 -2.9
Or see this region's nucleotide sequence