Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1009 and Dsui_1010 are separated by 141 nucleotides Dsui_1010 and Dsui_1011 are separated by 6 nucleotides
Dsui_1009: Dsui_1009 - PAS domain S-box, at 1,036,323 to 1,040,168
_1009
Dsui_1010: Dsui_1010 - ABC-type branched-chain amino acid transport system, periplasmic component, at 1,040,310 to 1,041,413
_1010
Dsui_1011: Dsui_1011 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 1,041,420 to 1,044,800
_1011
Position (kb)
1040
1041
1042 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1039.510 kb on - strand, within Dsui_1009 at 1039.560 kb on - strand, within Dsui_1009 at 1039.597 kb on - strand, within Dsui_1009 at 1039.733 kb on + strand, within Dsui_1009 at 1039.759 kb on - strand, within Dsui_1009 at 1039.759 kb on - strand, within Dsui_1009 at 1039.873 kb on - strand at 1039.917 kb on - strand at 1039.969 kb on - strand at 1039.969 kb on - strand at 1040.005 kb on + strand at 1040.119 kb on - strand at 1040.167 kb on + strand at 1040.211 kb on + strand at 1040.336 kb on - strand at 1040.351 kb on + strand at 1040.372 kb on + strand at 1040.424 kb on + strand, within Dsui_1010 at 1040.429 kb on + strand, within Dsui_1010 at 1040.429 kb on + strand, within Dsui_1010 at 1040.675 kb on + strand, within Dsui_1010 at 1040.741 kb on - strand, within Dsui_1010 at 1040.774 kb on - strand, within Dsui_1010 at 1040.781 kb on - strand, within Dsui_1010 at 1040.844 kb on - strand, within Dsui_1010 at 1040.895 kb on + strand, within Dsui_1010 at 1040.911 kb on - strand, within Dsui_1010 at 1040.977 kb on - strand, within Dsui_1010 at 1041.308 kb on + strand at 1041.486 kb on + strand at 1041.486 kb on + strand at 1041.486 kb on + strand at 1041.497 kb on + strand at 1041.505 kb on - strand at 1041.577 kb on - strand at 1041.680 kb on + strand at 1041.688 kb on - strand at 1041.737 kb on + strand at 1041.745 kb on - strand at 1041.776 kb on + strand at 1041.821 kb on + strand at 1041.826 kb on + strand, within Dsui_1011 at 1041.999 kb on + strand, within Dsui_1011 at 1042.025 kb on + strand, within Dsui_1011 at 1042.032 kb on - strand, within Dsui_1011 at 1042.120 kb on - strand, within Dsui_1011 at 1042.128 kb on + strand, within Dsui_1011 at 1042.233 kb on - strand, within Dsui_1011 at 1042.255 kb on + strand, within Dsui_1011 at 1042.362 kb on - strand, within Dsui_1011 at 1042.395 kb on - strand, within Dsui_1011
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 1,039,510 - Dsui_1009 0.83 -0.5 1,039,560 - Dsui_1009 0.84 -2.1 1,039,597 - Dsui_1009 0.85 +0.4 1,039,733 + Dsui_1009 0.89 -1.3 1,039,759 - Dsui_1009 0.89 -0.8 1,039,759 - Dsui_1009 0.89 +0.3 1,039,873 - -2.3 1,039,917 - +0.4 1,039,969 - +0.1 1,039,969 - +0.7 1,040,005 + +0.7 1,040,119 - -1.6 1,040,167 + +0.7 1,040,211 + +0.7 1,040,336 - +0.7 1,040,351 + +0.7 1,040,372 + +0.7 1,040,424 + Dsui_1010 0.10 -1.3 1,040,429 + Dsui_1010 0.11 -3.6 1,040,429 + Dsui_1010 0.11 -1.1 1,040,675 + Dsui_1010 0.33 +2.0 1,040,741 - Dsui_1010 0.39 +0.7 1,040,774 - Dsui_1010 0.42 -0.9 1,040,781 - Dsui_1010 0.43 -0.9 1,040,844 - Dsui_1010 0.48 -1.3 1,040,895 + Dsui_1010 0.53 -1.7 1,040,911 - Dsui_1010 0.54 -1.9 1,040,977 - Dsui_1010 0.60 +1.7 1,041,308 + -2.5 1,041,486 + -0.2 1,041,486 + +1.3 1,041,486 + +2.3 1,041,497 + -0.9 1,041,505 - -0.1 1,041,577 - -0.1 1,041,680 + +0.7 1,041,688 - +0.0 1,041,737 + -0.3 1,041,745 - -0.3 1,041,776 + +0.7 1,041,821 + +0.7 1,041,826 + Dsui_1011 0.12 -0.6 1,041,999 + Dsui_1011 0.17 -0.3 1,042,025 + Dsui_1011 0.18 -0.8 1,042,032 - Dsui_1011 0.18 +0.6 1,042,120 - Dsui_1011 0.21 -0.1 1,042,128 + Dsui_1011 0.21 -0.3 1,042,233 - Dsui_1011 0.24 -0.6 1,042,255 + Dsui_1011 0.25 -0.8 1,042,362 - Dsui_1011 0.28 -0.5 1,042,395 - Dsui_1011 0.29 +0.1
Or see this region's nucleotide sequence