Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0966 and Dsui_0967 are separated by 98 nucleotides Dsui_0967 and Dsui_0968 are separated by 54 nucleotides Dsui_0968 and Dsui_0969 are separated by 9 nucleotides
Dsui_0966: Dsui_0966 - methyl-accepting chemotaxis protein, at 990,998 to 993,025
_0966
Dsui_0967: Dsui_0967 - hypothetical protein, at 993,124 to 993,459
_0967
Dsui_0968: Dsui_0968 - deoxyinosine 3'endonuclease (endonuclease V), at 993,514 to 994,167
_0968
Dsui_0969: Dsui_0969 - putative AP superfamily protein, at 994,177 to 995,337
_0969
Position (kb) 993
994
995 Strain fitness (log2 ratio) -2
-1
0
1 at 992.585 kb on + strand, within Dsui_0966 at 993.364 kb on + strand, within Dsui_0967 at 993.372 kb on - strand, within Dsui_0967 at 993.380 kb on + strand, within Dsui_0967 at 993.405 kb on - strand, within Dsui_0967 at 993.695 kb on - strand, within Dsui_0968 at 993.789 kb on - strand, within Dsui_0968 at 994.027 kb on - strand, within Dsui_0968 at 994.048 kb on + strand, within Dsui_0968 at 994.138 kb on - strand at 994.143 kb on - strand at 994.143 kb on - strand at 994.143 kb on - strand at 994.160 kb on - strand at 994.175 kb on + strand at 994.175 kb on + strand at 994.175 kb on + strand at 994.175 kb on + strand at 994.183 kb on - strand at 994.225 kb on - strand at 994.305 kb on + strand, within Dsui_0969 at 994.455 kb on + strand, within Dsui_0969 at 994.463 kb on - strand, within Dsui_0969 at 994.575 kb on + strand, within Dsui_0969 at 994.617 kb on + strand, within Dsui_0969 at 994.674 kb on - strand, within Dsui_0969 at 994.723 kb on + strand, within Dsui_0969 at 994.731 kb on - strand, within Dsui_0969 at 994.793 kb on + strand, within Dsui_0969 at 994.831 kb on + strand, within Dsui_0969 at 994.839 kb on - strand, within Dsui_0969 at 994.875 kb on - strand, within Dsui_0969 at 994.979 kb on + strand, within Dsui_0969 at 994.999 kb on - strand, within Dsui_0969 at 995.144 kb on + strand, within Dsui_0969 at 995.152 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 992,585 + Dsui_0966 0.78 -0.4 993,364 + Dsui_0967 0.71 +0.3 993,372 - Dsui_0967 0.74 +0.6 993,380 + Dsui_0967 0.76 -0.3 993,405 - Dsui_0967 0.84 -0.4 993,695 - Dsui_0968 0.28 -1.4 993,789 - Dsui_0968 0.42 -0.4 994,027 - Dsui_0968 0.78 -1.0 994,048 + Dsui_0968 0.82 -2.5 994,138 - +0.6 994,143 - -0.4 994,143 - +0.6 994,143 - -0.4 994,160 - -1.4 994,175 + +0.6 994,175 + -1.4 994,175 + -1.0 994,175 + +0.6 994,183 - +0.6 994,225 - -0.1 994,305 + Dsui_0969 0.11 -0.4 994,455 + Dsui_0969 0.24 +0.6 994,463 - Dsui_0969 0.25 +0.0 994,575 + Dsui_0969 0.34 -1.4 994,617 + Dsui_0969 0.38 -1.4 994,674 - Dsui_0969 0.43 -2.5 994,723 + Dsui_0969 0.47 -2.2 994,731 - Dsui_0969 0.48 -1.0 994,793 + Dsui_0969 0.53 -1.0 994,831 + Dsui_0969 0.56 -0.4 994,839 - Dsui_0969 0.57 -1.7 994,875 - Dsui_0969 0.60 -0.4 994,979 + Dsui_0969 0.69 +0.6 994,999 - Dsui_0969 0.71 -2.0 995,144 + Dsui_0969 0.83 -0.4 995,152 - +0.6
Or see this region's nucleotide sequence