Strain Fitness in Dechlorosoma suillum PS around Dsui_0882

Experiment: ALP with Cisplatin 0.0008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0880 and Dsui_0881 are separated by 21 nucleotidesDsui_0881 and Dsui_0882 are separated by 189 nucleotidesDsui_0882 and Dsui_0883 are separated by 215 nucleotides Dsui_0880: Dsui_0880 - Bacterial regulatory protein, Fis family, at 892,302 to 892,619 _0880 Dsui_0881: Dsui_0881 - cAMP-binding protein, at 892,641 to 893,348 _0881 Dsui_0882: Dsui_0882 - nitrous oxide reductase, at 893,538 to 895,835 _0882 Dsui_0883: Dsui_0883 - transcriptional regulator with HTH domain and aminotransferase domain, at 896,051 to 897,478 _0883 Position (kb) 893 894 895 896Strain fitness (log2 ratio) -2 -1 0 1at 892.575 kb on - strand, within Dsui_0880at 892.590 kb on + strandat 892.686 kb on - strandat 892.693 kb on + strandat 892.719 kb on + strand, within Dsui_0881at 892.743 kb on + strand, within Dsui_0881at 892.751 kb on - strand, within Dsui_0881at 892.758 kb on + strand, within Dsui_0881at 892.771 kb on - strandat 892.787 kb on - strand, within Dsui_0881at 892.821 kb on - strand, within Dsui_0881at 892.876 kb on - strand, within Dsui_0881at 892.900 kb on - strand, within Dsui_0881at 892.921 kb on + strand, within Dsui_0881at 892.929 kb on + strand, within Dsui_0881at 893.065 kb on - strand, within Dsui_0881at 893.147 kb on + strand, within Dsui_0881at 893.155 kb on - strand, within Dsui_0881at 893.171 kb on + strand, within Dsui_0881at 893.227 kb on + strand, within Dsui_0881at 893.252 kb on + strand, within Dsui_0881at 893.260 kb on - strand, within Dsui_0881at 893.284 kb on - strandat 893.291 kb on - strandat 893.323 kb on + strandat 893.331 kb on - strandat 893.342 kb on + strandat 893.343 kb on + strandat 893.350 kb on - strandat 893.351 kb on - strandat 893.351 kb on - strandat 893.395 kb on - strandat 893.486 kb on + strandat 893.526 kb on + strandat 893.580 kb on - strandat 893.645 kb on - strandat 893.694 kb on - strandat 893.724 kb on + strandat 893.854 kb on - strand, within Dsui_0882at 893.867 kb on + strand, within Dsui_0882at 894.074 kb on + strandat 894.074 kb on + strand, within Dsui_0882at 894.082 kb on - strandat 894.082 kb on - strandat 894.142 kb on + strand, within Dsui_0882at 894.150 kb on - strand, within Dsui_0882at 894.160 kb on - strand, within Dsui_0882at 894.474 kb on - strand, within Dsui_0882at 894.691 kb on + strand, within Dsui_0882at 894.707 kb on + strand, within Dsui_0882at 894.707 kb on + strand, within Dsui_0882at 894.707 kb on + strand, within Dsui_0882at 894.715 kb on - strand, within Dsui_0882at 894.715 kb on - strand, within Dsui_0882at 894.757 kb on - strand, within Dsui_0882at 894.771 kb on + strand, within Dsui_0882at 894.771 kb on + strandat 894.771 kb on + strand, within Dsui_0882at 894.789 kb on - strand, within Dsui_0882at 894.789 kb on - strand, within Dsui_0882at 894.812 kb on + strand, within Dsui_0882at 894.834 kb on - strand, within Dsui_0882at 894.851 kb on + strand, within Dsui_0882at 894.869 kb on + strandat 894.956 kb on + strand, within Dsui_0882at 894.960 kb on - strand, within Dsui_0882at 895.049 kb on + strand, within Dsui_0882at 895.051 kb on - strand, within Dsui_0882at 895.134 kb on - strand, within Dsui_0882at 895.184 kb on + strand, within Dsui_0882at 895.205 kb on - strand, within Dsui_0882at 895.244 kb on + strand, within Dsui_0882at 895.279 kb on - strand, within Dsui_0882at 895.282 kb on + strand, within Dsui_0882at 895.282 kb on + strand, within Dsui_0882at 895.282 kb on + strandat 895.852 kb on + strandat 895.950 kb on - strandat 895.954 kb on + strandat 895.955 kb on + strandat 896.037 kb on - strandat 896.040 kb on + strandat 896.050 kb on - strandat 896.050 kb on - strandat 896.050 kb on - strandat 896.075 kb on + strandat 896.132 kb on + strandat 896.224 kb on + strand, within Dsui_0883at 896.227 kb on - strand, within Dsui_0883at 896.232 kb on - strand, within Dsui_0883at 896.232 kb on - strand, within Dsui_0883at 896.251 kb on + strand, within Dsui_0883at 896.274 kb on + strand, within Dsui_0883at 896.282 kb on - strand, within Dsui_0883at 896.282 kb on - strand, within Dsui_0883at 896.339 kb on + strandat 896.451 kb on - strand, within Dsui_0883at 896.463 kb on - strand, within Dsui_0883at 896.526 kb on - strand, within Dsui_0883at 896.526 kb on - strand, within Dsui_0883at 896.559 kb on - strandat 896.559 kb on - strand, within Dsui_0883at 896.559 kb on - strand, within Dsui_0883at 896.574 kb on + strandat 896.574 kb on + strandat 896.683 kb on - strand, within Dsui_0883at 896.742 kb on - strand, within Dsui_0883at 896.771 kb on - strand, within Dsui_0883at 896.776 kb on - strand, within Dsui_0883at 896.821 kb on + strand, within Dsui_0883

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml
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892,575 - Dsui_0880 0.86 -0.4
892,590 + +0.6
892,686 - -1.0
892,693 + -2.0
892,719 + Dsui_0881 0.11 +0.6
892,743 + Dsui_0881 0.14 -1.0
892,751 - Dsui_0881 0.16 -0.4
892,758 + Dsui_0881 0.17 -1.8
892,771 - +0.6
892,787 - Dsui_0881 0.21 -1.8
892,821 - Dsui_0881 0.25 +0.6
892,876 - Dsui_0881 0.33 -0.4
892,900 - Dsui_0881 0.37 -1.0
892,921 + Dsui_0881 0.40 -1.8
892,929 + Dsui_0881 0.41 -0.4
893,065 - Dsui_0881 0.60 -0.4
893,147 + Dsui_0881 0.71 -1.4
893,155 - Dsui_0881 0.73 -1.8
893,171 + Dsui_0881 0.75 -1.0
893,227 + Dsui_0881 0.83 +0.6
893,252 + Dsui_0881 0.86 -1.8
893,260 - Dsui_0881 0.87 +0.6
893,284 - +0.6
893,291 - +0.6
893,323 + -0.4
893,331 - -0.4
893,342 + -1.8
893,343 + -0.4
893,350 - +0.6
893,351 - +0.6
893,351 - -1.4
893,395 - -1.0
893,486 + +0.6
893,526 + +0.6
893,580 - -0.4
893,645 - -0.4
893,694 - -2.0
893,724 + -1.0
893,854 - Dsui_0882 0.14 +0.6
893,867 + Dsui_0882 0.14 -0.4
894,074 + +0.6
894,074 + Dsui_0882 0.23 +0.6
894,082 - +0.6
894,082 - +0.6
894,142 + Dsui_0882 0.26 -0.4
894,150 - Dsui_0882 0.27 -0.4
894,160 - Dsui_0882 0.27 -1.8
894,474 - Dsui_0882 0.41 +0.6
894,691 + Dsui_0882 0.50 +0.6
894,707 + Dsui_0882 0.51 -0.4
894,707 + Dsui_0882 0.51 -1.0
894,707 + Dsui_0882 0.51 +0.6
894,715 - Dsui_0882 0.51 +0.6
894,715 - Dsui_0882 0.51 -1.0
894,757 - Dsui_0882 0.53 -1.0
894,771 + Dsui_0882 0.54 -1.0
894,771 + +0.6
894,771 + Dsui_0882 0.54 -2.4
894,789 - Dsui_0882 0.54 +0.6
894,789 - Dsui_0882 0.54 +0.6
894,812 + Dsui_0882 0.55 +0.6
894,834 - Dsui_0882 0.56 -0.4
894,851 + Dsui_0882 0.57 -1.0
894,869 + +0.6
894,956 + Dsui_0882 0.62 -2.4
894,960 - Dsui_0882 0.62 -1.0
895,049 + Dsui_0882 0.66 +0.6
895,051 - Dsui_0882 0.66 +0.6
895,134 - Dsui_0882 0.69 -1.0
895,184 + Dsui_0882 0.72 +0.6
895,205 - Dsui_0882 0.73 +0.6
895,244 + Dsui_0882 0.74 +0.8
895,279 - Dsui_0882 0.76 +0.6
895,282 + Dsui_0882 0.76 -2.0
895,282 + Dsui_0882 0.76 -1.8
895,282 + +0.6
895,852 + +0.6
895,950 - -0.4
895,954 + -1.0
895,955 + +0.6
896,037 - -1.0
896,040 + +0.6
896,050 - -2.4
896,050 - +0.6
896,050 - +0.6
896,075 + -2.3
896,132 + -1.8
896,224 + Dsui_0883 0.12 -0.4
896,227 - Dsui_0883 0.12 +0.2
896,232 - Dsui_0883 0.13 -0.8
896,232 - Dsui_0883 0.13 -1.4
896,251 + Dsui_0883 0.14 +0.6
896,274 + Dsui_0883 0.16 -2.3
896,282 - Dsui_0883 0.16 +0.6
896,282 - Dsui_0883 0.16 -0.4
896,339 + +0.6
896,451 - Dsui_0883 0.28 -1.6
896,463 - Dsui_0883 0.29 +0.6
896,526 - Dsui_0883 0.33 +0.1
896,526 - Dsui_0883 0.33 +0.6
896,559 - +1.6
896,559 - Dsui_0883 0.36 -0.0
896,559 - Dsui_0883 0.36 +1.3
896,574 + +0.6
896,574 + +0.6
896,683 - Dsui_0883 0.44 -2.4
896,742 - Dsui_0883 0.48 -0.8
896,771 - Dsui_0883 0.50 -0.6
896,776 - Dsui_0883 0.51 -2.6
896,821 + Dsui_0883 0.54 +1.6

Or see this region's nucleotide sequence