Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0837 and Dsui_0838 are separated by 77 nucleotides Dsui_0838 and Dsui_0839 are separated by 179 nucleotides
Dsui_0837: Dsui_0837 - tRNA modification GTPase TrmE, at 851,146 to 852,498
_0837
Dsui_0838: Dsui_0838 - hypothetical protein, at 852,576 to 853,673
_0838
Dsui_0839: Dsui_0839 - ABC-type branched-chain amino acid transport system, periplasmic component, at 853,853 to 855,007
_0839
Position (kb) 852
853
854 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 851.660 kb on - strand at 851.671 kb on - strand at 851.803 kb on + strand, within Dsui_0837 at 851.839 kb on - strand at 851.839 kb on - strand, within Dsui_0837 at 851.907 kb on + strand, within Dsui_0837 at 851.977 kb on + strand, within Dsui_0837 at 852.251 kb on + strand, within Dsui_0837 at 852.441 kb on + strand at 852.477 kb on - strand at 852.568 kb on + strand at 852.568 kb on - strand at 852.597 kb on - strand at 852.609 kb on - strand at 852.646 kb on - strand at 852.727 kb on - strand, within Dsui_0838 at 852.771 kb on - strand at 852.774 kb on + strand, within Dsui_0838 at 852.860 kb on + strand at 852.860 kb on + strand, within Dsui_0838 at 852.929 kb on + strand, within Dsui_0838 at 852.950 kb on + strand at 853.004 kb on + strand at 853.058 kb on - strand at 853.147 kb on + strand, within Dsui_0838 at 853.147 kb on + strand, within Dsui_0838 at 853.188 kb on - strand, within Dsui_0838 at 853.226 kb on - strand, within Dsui_0838 at 853.241 kb on - strand at 853.243 kb on + strand, within Dsui_0838 at 853.244 kb on + strand, within Dsui_0838 at 853.252 kb on - strand at 853.253 kb on + strand, within Dsui_0838 at 853.263 kb on + strand, within Dsui_0838 at 853.289 kb on - strand, within Dsui_0838 at 853.296 kb on - strand at 853.425 kb on + strand, within Dsui_0838 at 853.460 kb on + strand, within Dsui_0838 at 853.485 kb on + strand, within Dsui_0838 at 853.485 kb on + strand, within Dsui_0838 at 853.488 kb on - strand, within Dsui_0838 at 853.535 kb on + strand, within Dsui_0838 at 853.575 kb on - strand at 853.593 kb on - strand at 853.798 kb on + strand at 853.798 kb on + strand at 853.850 kb on - strand at 853.924 kb on - strand at 853.938 kb on + strand at 853.959 kb on + strand at 854.013 kb on - strand at 854.057 kb on + strand, within Dsui_0839 at 854.057 kb on + strand, within Dsui_0839 at 854.103 kb on - strand at 854.112 kb on + strand, within Dsui_0839 at 854.115 kb on - strand, within Dsui_0839 at 854.120 kb on - strand, within Dsui_0839 at 854.151 kb on - strand, within Dsui_0839 at 854.157 kb on - strand, within Dsui_0839 at 854.161 kb on + strand, within Dsui_0839 at 854.234 kb on + strand, within Dsui_0839 at 854.264 kb on + strand, within Dsui_0839 at 854.264 kb on + strand, within Dsui_0839 at 854.272 kb on - strand, within Dsui_0839 at 854.272 kb on - strand, within Dsui_0839 at 854.303 kb on + strand, within Dsui_0839 at 854.317 kb on - strand, within Dsui_0839 at 854.391 kb on + strand, within Dsui_0839 at 854.437 kb on - strand, within Dsui_0839 at 854.523 kb on + strand, within Dsui_0839 at 854.531 kb on - strand, within Dsui_0839 at 854.557 kb on + strand, within Dsui_0839 at 854.622 kb on + strand, within Dsui_0839 at 854.629 kb on + strand, within Dsui_0839
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 851,660 - -0.5 851,671 - +0.5 851,803 + Dsui_0837 0.49 -0.6 851,839 - -2.1 851,839 - Dsui_0837 0.51 -1.5 851,907 + Dsui_0837 0.56 -1.8 851,977 + Dsui_0837 0.61 +0.5 852,251 + Dsui_0837 0.82 -1.8 852,441 + -2.1 852,477 - -1.1 852,568 + +0.3 852,568 - -1.1 852,597 - +0.5 852,609 - -1.1 852,646 - +0.5 852,727 - Dsui_0838 0.14 +0.5 852,771 - +0.5 852,774 + Dsui_0838 0.18 +0.2 852,860 + -1.1 852,860 + Dsui_0838 0.26 -1.8 852,929 + Dsui_0838 0.32 -1.1 852,950 + +0.5 853,004 + +0.5 853,058 - -0.5 853,147 + Dsui_0838 0.52 -1.5 853,147 + Dsui_0838 0.52 -2.9 853,188 - Dsui_0838 0.56 -1.1 853,226 - Dsui_0838 0.59 -1.8 853,241 - -0.5 853,243 + Dsui_0838 0.61 -1.1 853,244 + Dsui_0838 0.61 -1.5 853,252 - -0.5 853,253 + Dsui_0838 0.62 -0.5 853,263 + Dsui_0838 0.63 -0.5 853,289 - Dsui_0838 0.65 -1.5 853,296 - +0.5 853,425 + Dsui_0838 0.77 -1.5 853,460 + Dsui_0838 0.81 +0.5 853,485 + Dsui_0838 0.83 -1.5 853,485 + Dsui_0838 0.83 -1.5 853,488 - Dsui_0838 0.83 -1.5 853,535 + Dsui_0838 0.87 -1.1 853,575 - +0.5 853,593 - -0.5 853,798 + -0.5 853,798 + -0.7 853,850 - +0.5 853,924 - +0.5 853,938 + -0.5 853,959 + -0.5 854,013 - -1.1 854,057 + Dsui_0839 0.18 -1.8 854,057 + Dsui_0839 0.18 +0.5 854,103 - +0.5 854,112 + Dsui_0839 0.22 -1.5 854,115 - Dsui_0839 0.23 +0.5 854,120 - Dsui_0839 0.23 -0.5 854,151 - Dsui_0839 0.26 -1.1 854,157 - Dsui_0839 0.26 -2.1 854,161 + Dsui_0839 0.27 +0.5 854,234 + Dsui_0839 0.33 -0.5 854,264 + Dsui_0839 0.36 -0.5 854,264 + Dsui_0839 0.36 -0.5 854,272 - Dsui_0839 0.36 +0.5 854,272 - Dsui_0839 0.36 -2.3 854,303 + Dsui_0839 0.39 -0.5 854,317 - Dsui_0839 0.40 +0.5 854,391 + Dsui_0839 0.47 +0.5 854,437 - Dsui_0839 0.51 +0.5 854,523 + Dsui_0839 0.58 -1.1 854,531 - Dsui_0839 0.59 -2.3 854,557 + Dsui_0839 0.61 +0.5 854,622 + Dsui_0839 0.67 -2.7 854,629 + Dsui_0839 0.67 +0.5
Or see this region's nucleotide sequence