Strain Fitness in Dechlorosoma suillum PS around Dsui_0805

Experiment: ALP with Cisplatin 0.0008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_0804 and Dsui_0805 are separated by 200 nucleotidesDsui_0805 and Dsui_0806 are separated by 651 nucleotides Dsui_0804: Dsui_0804 - hypothetical protein, at 811,179 to 812,312 _0804 Dsui_0805: Dsui_0805 - primosomal protein N'', at 812,513 to 814,537 _0805 Dsui_0806: Dsui_0806 - uroporphyrinogen decarboxylase, at 815,189 to 816,271 _0806 Position (kb) 812 813 814 815Strain fitness (log2 ratio) -3 -2 -1 0 1at 811.526 kb on + strand, within Dsui_0804at 811.589 kb on + strand, within Dsui_0804at 811.600 kb on + strand, within Dsui_0804at 811.625 kb on + strand, within Dsui_0804at 811.731 kb on + strandat 811.746 kb on - strand, within Dsui_0804at 811.815 kb on + strand, within Dsui_0804at 811.847 kb on + strand, within Dsui_0804at 811.855 kb on - strand, within Dsui_0804at 811.855 kb on - strand, within Dsui_0804at 811.880 kb on + strand, within Dsui_0804at 811.884 kb on + strand, within Dsui_0804at 811.884 kb on + strandat 811.892 kb on - strand, within Dsui_0804at 811.894 kb on - strand, within Dsui_0804at 811.902 kb on - strand, within Dsui_0804at 811.945 kb on + strand, within Dsui_0804at 811.953 kb on - strand, within Dsui_0804at 811.955 kb on + strand, within Dsui_0804at 811.963 kb on - strand, within Dsui_0804at 811.970 kb on + strand, within Dsui_0804at 811.970 kb on + strand, within Dsui_0804at 811.978 kb on - strand, within Dsui_0804at 812.012 kb on - strand, within Dsui_0804at 812.063 kb on + strand, within Dsui_0804at 812.063 kb on + strand, within Dsui_0804at 812.153 kb on + strand, within Dsui_0804at 812.232 kb on - strandat 812.266 kb on + strandat 812.332 kb on - strandat 812.346 kb on + strandat 812.353 kb on - strandat 812.354 kb on - strandat 812.459 kb on - strandat 812.485 kb on - strandat 814.583 kb on + strandat 814.584 kb on + strandat 814.584 kb on + strandat 814.608 kb on - strandat 814.659 kb on + strandat 814.671 kb on + strandat 814.683 kb on + strandat 814.683 kb on + strandat 814.683 kb on + strandat 814.683 kb on + strandat 814.683 kb on + strandat 814.683 kb on + strandat 814.683 kb on + strandat 814.686 kb on - strandat 814.691 kb on - strandat 814.691 kb on - strandat 814.691 kb on - strandat 814.691 kb on - strandat 814.691 kb on - strandat 814.691 kb on - strandat 814.695 kb on + strandat 814.703 kb on - strandat 814.706 kb on + strandat 814.740 kb on + strandat 814.748 kb on - strandat 814.794 kb on + strandat 814.830 kb on + strandat 814.831 kb on + strandat 814.831 kb on + strandat 814.838 kb on - strandat 814.842 kb on + strandat 814.851 kb on - strandat 814.874 kb on + strandat 814.926 kb on - strandat 814.954 kb on + strandat 814.962 kb on - strandat 814.962 kb on - strandat 814.976 kb on + strandat 814.980 kb on - strandat 815.002 kb on + strandat 815.010 kb on - strandat 815.021 kb on - strandat 815.038 kb on - strandat 815.043 kb on - strandat 815.043 kb on - strandat 815.128 kb on - strandat 815.128 kb on - strandat 815.171 kb on + strandat 815.181 kb on + strandat 815.182 kb on + strandat 815.189 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml
remove
811,526 + Dsui_0804 0.31 +0.6
811,589 + Dsui_0804 0.36 +0.6
811,600 + Dsui_0804 0.37 -1.2
811,625 + Dsui_0804 0.39 -1.8
811,731 + +0.6
811,746 - Dsui_0804 0.50 -2.3
811,815 + Dsui_0804 0.56 -1.0
811,847 + Dsui_0804 0.59 -1.8
811,855 - Dsui_0804 0.60 +0.6
811,855 - Dsui_0804 0.60 +0.6
811,880 + Dsui_0804 0.62 +0.6
811,884 + Dsui_0804 0.62 -0.4
811,884 + +0.6
811,892 - Dsui_0804 0.63 -0.4
811,894 - Dsui_0804 0.63 -0.4
811,902 - Dsui_0804 0.64 -0.0
811,945 + Dsui_0804 0.68 +0.6
811,953 - Dsui_0804 0.68 +1.6
811,955 + Dsui_0804 0.68 +0.6
811,963 - Dsui_0804 0.69 -0.4
811,970 + Dsui_0804 0.70 -1.4
811,970 + Dsui_0804 0.70 -0.4
811,978 - Dsui_0804 0.70 +0.6
812,012 - Dsui_0804 0.73 +0.6
812,063 + Dsui_0804 0.78 -3.1
812,063 + Dsui_0804 0.78 -1.0
812,153 + Dsui_0804 0.86 -0.4
812,232 - +0.6
812,266 + +0.6
812,332 - -0.4
812,346 + -1.0
812,353 - +0.1
812,354 - -1.4
812,459 - -1.0
812,485 - -0.3
814,583 + +0.6
814,584 + +0.6
814,584 + -1.0
814,608 - +0.6
814,659 + -1.4
814,671 + -0.4
814,683 + +0.6
814,683 + -1.0
814,683 + +0.6
814,683 + -0.4
814,683 + +0.6
814,683 + -2.6
814,683 + +0.6
814,686 - +0.6
814,691 - -1.4
814,691 - -0.4
814,691 - +0.6
814,691 - +1.6
814,691 - -1.8
814,691 - +0.6
814,695 + +0.6
814,703 - +0.6
814,706 + -0.4
814,740 + +0.6
814,748 - +0.6
814,794 + +0.6
814,830 + -1.4
814,831 + +0.6
814,831 + -0.4
814,838 - +0.6
814,842 + -0.4
814,851 - +0.6
814,874 + -1.0
814,926 - -1.3
814,954 + -2.0
814,962 - -1.5
814,962 - +0.2
814,976 + -2.3
814,980 - -1.3
815,002 + -0.9
815,010 - -2.0
815,021 - +0.6
815,038 - -0.4
815,043 - +0.4
815,043 - -0.4
815,128 - -0.4
815,128 - -0.3
815,171 + -0.0
815,181 + -1.3
815,182 + +0.6
815,189 - -0.2

Or see this region's nucleotide sequence