Strain Fitness in Dechlorosoma suillum PS around Dsui_0747

Experiment: ALP with Cisplatin 0.0008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_0746 and Dsui_0747 are separated by 94 nucleotidesDsui_0747 and Dsui_0748 are separated by 173 nucleotides Dsui_0746: Dsui_0746 - glutathione synthetase, at 743,808 to 744,755 _0746 Dsui_0747: Dsui_0747 - glutamate--cysteine ligase, at 744,850 to 746,130 _0747 Dsui_0748: Dsui_0748 - ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component, at 746,304 to 747,302 _0748 Position (kb) 744 745 746 747Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 743.863 kb on - strandat 743.955 kb on - strand, within Dsui_0746at 744.017 kb on + strand, within Dsui_0746at 744.104 kb on - strand, within Dsui_0746at 744.137 kb on - strand, within Dsui_0746at 744.152 kb on - strand, within Dsui_0746at 744.165 kb on + strand, within Dsui_0746at 744.192 kb on + strand, within Dsui_0746at 744.245 kb on + strandat 744.325 kb on - strand, within Dsui_0746at 744.350 kb on - strand, within Dsui_0746at 744.358 kb on - strand, within Dsui_0746at 744.403 kb on + strand, within Dsui_0746at 744.436 kb on + strand, within Dsui_0746at 744.438 kb on - strand, within Dsui_0746at 744.455 kb on + strandat 744.459 kb on + strandat 744.471 kb on - strand, within Dsui_0746at 744.545 kb on - strand, within Dsui_0746at 744.626 kb on + strand, within Dsui_0746at 744.626 kb on + strand, within Dsui_0746at 744.654 kb on + strand, within Dsui_0746at 744.712 kb on + strandat 744.712 kb on + strandat 744.712 kb on + strandat 744.717 kb on + strandat 744.720 kb on - strandat 744.722 kb on + strandat 744.722 kb on + strandat 744.803 kb on + strandat 744.829 kb on - strandat 744.840 kb on + strandat 744.955 kb on - strandat 744.999 kb on - strand, within Dsui_0747at 745.019 kb on - strand, within Dsui_0747at 745.143 kb on - strand, within Dsui_0747at 745.178 kb on - strand, within Dsui_0747at 745.189 kb on - strand, within Dsui_0747at 745.607 kb on - strand, within Dsui_0747at 745.614 kb on + strandat 745.683 kb on + strand, within Dsui_0747at 745.701 kb on + strand, within Dsui_0747at 745.709 kb on - strand, within Dsui_0747at 745.976 kb on - strand, within Dsui_0747at 746.091 kb on + strandat 746.301 kb on + strandat 746.301 kb on + strandat 746.301 kb on + strandat 746.309 kb on - strandat 746.309 kb on - strandat 746.309 kb on - strandat 746.309 kb on - strandat 746.358 kb on + strandat 746.493 kb on - strand, within Dsui_0748at 746.557 kb on - strand, within Dsui_0748at 746.593 kb on + strand, within Dsui_0748at 746.614 kb on + strand, within Dsui_0748at 746.667 kb on + strand, within Dsui_0748at 746.710 kb on - strandat 746.710 kb on - strand, within Dsui_0748at 746.710 kb on - strandat 746.754 kb on - strandat 746.783 kb on + strand, within Dsui_0748at 746.862 kb on + strand, within Dsui_0748at 746.919 kb on + strand, within Dsui_0748at 746.940 kb on + strand, within Dsui_0748at 747.108 kb on - strand, within Dsui_0748at 747.110 kb on + strand, within Dsui_0748at 747.110 kb on + strand, within Dsui_0748at 747.127 kb on + strand, within Dsui_0748at 747.127 kb on + strand, within Dsui_0748

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml
remove
743,863 - +0.3
743,955 - Dsui_0746 0.16 -0.4
744,017 + Dsui_0746 0.22 -3.2
744,104 - Dsui_0746 0.31 -0.3
744,137 - Dsui_0746 0.35 -0.6
744,152 - Dsui_0746 0.36 +0.3
744,165 + Dsui_0746 0.38 -1.5
744,192 + Dsui_0746 0.41 +0.5
744,245 + -0.5
744,325 - Dsui_0746 0.55 -0.7
744,350 - Dsui_0746 0.57 -0.3
744,358 - Dsui_0746 0.58 -0.5
744,403 + Dsui_0746 0.63 -1.5
744,436 + Dsui_0746 0.66 -1.1
744,438 - Dsui_0746 0.66 +0.2
744,455 + +0.5
744,459 + +0.5
744,471 - Dsui_0746 0.70 -0.4
744,545 - Dsui_0746 0.78 -0.9
744,626 + Dsui_0746 0.86 +0.5
744,626 + Dsui_0746 0.86 -0.5
744,654 + Dsui_0746 0.89 +0.5
744,712 + -1.4
744,712 + +0.5
744,712 + -0.5
744,717 + -0.5
744,720 - +0.1
744,722 + -1.1
744,722 + -1.1
744,803 + +0.5
744,829 - -0.4
744,840 + +0.5
744,955 - -2.9
744,999 - Dsui_0747 0.12 -3.4
745,019 - Dsui_0747 0.13 -2.0
745,143 - Dsui_0747 0.23 -3.4
745,178 - Dsui_0747 0.26 -2.8
745,189 - Dsui_0747 0.26 -3.2
745,607 - Dsui_0747 0.59 -2.6
745,614 + -0.5
745,683 + Dsui_0747 0.65 -1.1
745,701 + Dsui_0747 0.66 -1.9
745,709 - Dsui_0747 0.67 -3.1
745,976 - Dsui_0747 0.88 -3.9
746,091 + -0.5
746,301 + +0.7
746,301 + -0.3
746,301 + +0.5
746,309 - -1.5
746,309 - +0.5
746,309 - +0.5
746,309 - +0.5
746,358 + -0.2
746,493 - Dsui_0748 0.19 -2.4
746,557 - Dsui_0748 0.25 -1.1
746,593 + Dsui_0748 0.29 +0.1
746,614 + Dsui_0748 0.31 -0.2
746,667 + Dsui_0748 0.36 -0.1
746,710 - +0.5
746,710 - Dsui_0748 0.41 -1.1
746,710 - +0.5
746,754 - +0.5
746,783 + Dsui_0748 0.48 -0.9
746,862 + Dsui_0748 0.56 -0.2
746,919 + Dsui_0748 0.62 -0.6
746,940 + Dsui_0748 0.64 -1.1
747,108 - Dsui_0748 0.80 -1.1
747,110 + Dsui_0748 0.81 +0.7
747,110 + Dsui_0748 0.81 -0.6
747,127 + Dsui_0748 0.82 -0.2
747,127 + Dsui_0748 0.82 +0.1

Or see this region's nucleotide sequence