Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0620 and Dsui_0621 are separated by 2 nucleotides Dsui_0621 and Dsui_0622 are separated by 185 nucleotides Dsui_0622 and Dsui_0623 are separated by 1 nucleotides Dsui_0623 and Dsui_0624 are separated by 12 nucleotides
Dsui_0620: Dsui_0620 - Fe2+-dicitrate sensor, membrane component, at 615,787 to 616,710
_0620
Dsui_0621: Dsui_0621 - RNA polymerase sigma factor, sigma-70 family, at 616,713 to 617,210
_0621
Dsui_0622: Dsui_0622 - NosL, at 617,396 to 618,001
_0622
Dsui_0623: Dsui_0623 - putative lipoprotein involved in nitrous oxide reduction, at 618,003 to 618,488
_0623
Dsui_0624: Dsui_0624 - hypothetical protein, at 618,501 to 619,610
_0624
Position (kb) 617
618
619 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 616.533 kb on + strand, within Dsui_0620 at 616.681 kb on + strand at 616.825 kb on - strand at 617.055 kb on + strand, within Dsui_0621 at 617.108 kb on + strand, within Dsui_0621 at 617.149 kb on - strand, within Dsui_0621 at 617.177 kb on + strand at 617.185 kb on - strand at 617.187 kb on + strand at 617.430 kb on - strand at 617.518 kb on + strand, within Dsui_0622 at 617.550 kb on - strand, within Dsui_0622 at 617.621 kb on + strand, within Dsui_0622 at 617.634 kb on - strand, within Dsui_0622 at 617.639 kb on - strand, within Dsui_0622 at 617.687 kb on - strand, within Dsui_0622 at 617.713 kb on + strand, within Dsui_0622 at 617.814 kb on - strand, within Dsui_0622 at 617.819 kb on - strand, within Dsui_0622 at 617.906 kb on - strand, within Dsui_0622 at 617.950 kb on - strand at 618.035 kb on + strand at 618.137 kb on - strand, within Dsui_0623 at 618.261 kb on - strand, within Dsui_0623 at 618.271 kb on - strand, within Dsui_0623 at 618.276 kb on - strand, within Dsui_0623 at 618.304 kb on + strand, within Dsui_0623 at 618.337 kb on + strand, within Dsui_0623 at 618.507 kb on - strand at 618.667 kb on - strand, within Dsui_0624 at 618.995 kb on + strand at 619.000 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 616,533 + Dsui_0620 0.81 -2.8 616,681 + +0.5 616,825 - -0.5 617,055 + Dsui_0621 0.69 +0.5 617,108 + Dsui_0621 0.79 +0.5 617,149 - Dsui_0621 0.88 -0.2 617,177 + -0.5 617,185 - -0.5 617,187 + +0.5 617,430 - -1.1 617,518 + Dsui_0622 0.20 -2.8 617,550 - Dsui_0622 0.25 +0.5 617,621 + Dsui_0622 0.37 -3.8 617,634 - Dsui_0622 0.39 -3.0 617,639 - Dsui_0622 0.40 -2.3 617,687 - Dsui_0622 0.48 -1.5 617,713 + Dsui_0622 0.52 +0.2 617,814 - Dsui_0622 0.69 -1.1 617,819 - Dsui_0622 0.70 -2.5 617,906 - Dsui_0622 0.84 +0.5 617,950 - +0.5 618,035 + -0.5 618,137 - Dsui_0623 0.28 +1.5 618,261 - Dsui_0623 0.53 +0.5 618,271 - Dsui_0623 0.55 +0.5 618,276 - Dsui_0623 0.56 +0.5 618,304 + Dsui_0623 0.62 -1.5 618,337 + Dsui_0623 0.69 -3.5 618,507 - +0.3 618,667 - Dsui_0624 0.15 +0.1 618,995 + +0.5 619,000 + -0.5
Or see this region's nucleotide sequence