Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0619 and Dsui_0620 are separated by 96 nucleotides Dsui_0620 and Dsui_0621 are separated by 2 nucleotides Dsui_0621 and Dsui_0622 are separated by 185 nucleotides
Dsui_0619: Dsui_0619 - TonB-dependent siderophore receptor, at 613,327 to 615,690
_0619
Dsui_0620: Dsui_0620 - Fe2+-dicitrate sensor, membrane component, at 615,787 to 616,710
_0620
Dsui_0621: Dsui_0621 - RNA polymerase sigma factor, sigma-70 family, at 616,713 to 617,210
_0621
Dsui_0622: Dsui_0622 - NosL, at 617,396 to 618,001
_0622
Position (kb) 615
616
617 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 615.051 kb on - strand, within Dsui_0619 at 615.073 kb on + strand, within Dsui_0619 at 615.125 kb on - strand, within Dsui_0619 at 615.176 kb on - strand at 615.194 kb on - strand, within Dsui_0619 at 615.418 kb on + strand, within Dsui_0619 at 615.501 kb on - strand at 615.509 kb on - strand at 615.600 kb on - strand at 615.623 kb on + strand at 615.623 kb on + strand at 615.696 kb on + strand at 615.708 kb on + strand at 615.813 kb on + strand at 615.823 kb on + strand at 615.973 kb on - strand, within Dsui_0620 at 615.983 kb on - strand, within Dsui_0620 at 615.988 kb on + strand at 615.990 kb on - strand at 616.067 kb on + strand, within Dsui_0620 at 616.072 kb on + strand, within Dsui_0620 at 616.080 kb on - strand, within Dsui_0620 at 616.137 kb on - strand, within Dsui_0620 at 616.179 kb on - strand, within Dsui_0620 at 616.226 kb on - strand, within Dsui_0620 at 616.231 kb on + strand, within Dsui_0620 at 616.290 kb on + strand, within Dsui_0620 at 616.533 kb on + strand, within Dsui_0620 at 616.681 kb on + strand at 616.825 kb on - strand at 617.055 kb on + strand, within Dsui_0621 at 617.108 kb on + strand, within Dsui_0621 at 617.149 kb on - strand, within Dsui_0621 at 617.177 kb on + strand at 617.185 kb on - strand at 617.187 kb on + strand at 617.430 kb on - strand at 617.518 kb on + strand, within Dsui_0622 at 617.550 kb on - strand, within Dsui_0622 at 617.621 kb on + strand, within Dsui_0622 at 617.634 kb on - strand, within Dsui_0622 at 617.639 kb on - strand, within Dsui_0622 at 617.687 kb on - strand, within Dsui_0622
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 615,051 - Dsui_0619 0.73 +0.5 615,073 + Dsui_0619 0.74 -1.1 615,125 - Dsui_0619 0.76 +0.5 615,176 - +0.5 615,194 - Dsui_0619 0.79 -0.5 615,418 + Dsui_0619 0.88 -0.5 615,501 - -0.5 615,509 - -0.5 615,600 - -0.1 615,623 + +0.5 615,623 + -1.5 615,696 + -1.1 615,708 + -0.5 615,813 + +0.5 615,823 + -1.1 615,973 - Dsui_0620 0.20 -1.1 615,983 - Dsui_0620 0.21 -1.5 615,988 + -0.5 615,990 - +0.5 616,067 + Dsui_0620 0.30 +0.5 616,072 + Dsui_0620 0.31 -1.1 616,080 - Dsui_0620 0.32 -2.3 616,137 - Dsui_0620 0.38 -3.0 616,179 - Dsui_0620 0.42 +0.5 616,226 - Dsui_0620 0.48 -1.8 616,231 + Dsui_0620 0.48 +0.5 616,290 + Dsui_0620 0.54 -2.7 616,533 + Dsui_0620 0.81 -2.8 616,681 + +0.5 616,825 - -0.5 617,055 + Dsui_0621 0.69 +0.5 617,108 + Dsui_0621 0.79 +0.5 617,149 - Dsui_0621 0.88 -0.2 617,177 + -0.5 617,185 - -0.5 617,187 + +0.5 617,430 - -1.1 617,518 + Dsui_0622 0.20 -2.8 617,550 - Dsui_0622 0.25 +0.5 617,621 + Dsui_0622 0.37 -3.8 617,634 - Dsui_0622 0.39 -3.0 617,639 - Dsui_0622 0.40 -2.3 617,687 - Dsui_0622 0.48 -1.5
Or see this region's nucleotide sequence