Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0571 and Dsui_0572 are separated by 9 nucleotides Dsui_0572 and Dsui_0573 are separated by 241 nucleotides Dsui_0573 and Dsui_0574 are separated by 16 nucleotides
Dsui_0571: Dsui_0571 - ferredoxin, at 570,546 to 570,869
_0571
Dsui_0572: Dsui_0572 - hypothetical protein, at 570,879 to 571,334
_0572
Dsui_0573: Dsui_0573 - ferredoxin-like protein, at 571,576 to 571,863
_0573
Dsui_0574: Dsui_0574 - flavin-dependent dehydrogenase, at 571,880 to 573,178
_0574
Position (kb) 571
572 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 570.656 kb on - strand, within Dsui_0571 at 570.698 kb on + strand, within Dsui_0571 at 571.022 kb on - strand, within Dsui_0572 at 571.041 kb on - strand, within Dsui_0572 at 571.138 kb on - strand, within Dsui_0572 at 571.171 kb on + strand, within Dsui_0572 at 571.194 kb on + strand, within Dsui_0572 at 571.251 kb on - strand, within Dsui_0572 at 571.297 kb on - strand at 571.317 kb on - strand at 571.406 kb on + strand at 571.416 kb on - strand at 571.458 kb on + strand at 571.534 kb on + strand at 571.534 kb on - strand at 571.535 kb on + strand at 571.535 kb on + strand at 571.535 kb on + strand at 571.535 kb on + strand at 571.543 kb on - strand at 571.543 kb on - strand at 571.562 kb on + strand at 571.701 kb on + strand, within Dsui_0573 at 571.721 kb on - strand, within Dsui_0573 at 571.758 kb on - strand at 571.873 kb on - strand at 571.978 kb on + strand at 572.014 kb on - strand, within Dsui_0574 at 572.014 kb on - strand, within Dsui_0574 at 572.146 kb on + strand at 572.192 kb on + strand, within Dsui_0574 at 572.303 kb on - strand, within Dsui_0574 at 572.303 kb on - strand at 572.321 kb on - strand, within Dsui_0574 at 572.339 kb on - strand, within Dsui_0574 at 572.430 kb on + strand at 572.505 kb on + strand, within Dsui_0574 at 572.638 kb on - strand, within Dsui_0574 at 572.645 kb on - strand at 572.793 kb on - strand, within Dsui_0574 at 572.821 kb on - strand at 572.838 kb on - strand, within Dsui_0574
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 570,656 - Dsui_0571 0.34 +0.1 570,698 + Dsui_0571 0.47 -2.5 571,022 - Dsui_0572 0.31 -1.4 571,041 - Dsui_0572 0.36 -0.7 571,138 - Dsui_0572 0.57 -0.6 571,171 + Dsui_0572 0.64 -1.1 571,194 + Dsui_0572 0.69 +0.4 571,251 - Dsui_0572 0.82 -1.3 571,297 - -0.7 571,317 - +0.4 571,406 + +0.4 571,416 - -0.6 571,458 + +0.4 571,534 + +0.4 571,534 - -1.2 571,535 + -1.1 571,535 + -1.6 571,535 + +1.4 571,535 + +0.4 571,543 - +1.0 571,543 - +1.4 571,562 + -1.1 571,701 + Dsui_0573 0.43 -2.1 571,721 - Dsui_0573 0.50 -1.1 571,758 - -0.6 571,873 - -1.6 571,978 + +0.4 572,014 - Dsui_0574 0.10 +0.4 572,014 - Dsui_0574 0.10 -0.6 572,146 + +0.4 572,192 + Dsui_0574 0.24 +0.4 572,303 - Dsui_0574 0.33 +0.4 572,303 - +0.4 572,321 - Dsui_0574 0.34 +0.4 572,339 - Dsui_0574 0.35 -1.1 572,430 + +0.4 572,505 + Dsui_0574 0.48 -1.1 572,638 - Dsui_0574 0.58 -2.4 572,645 - -0.6 572,793 - Dsui_0574 0.70 -0.6 572,821 - -0.6 572,838 - Dsui_0574 0.74 -3.1
Or see this region's nucleotide sequence