Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0555 and Dsui_0556 are separated by 21 nucleotides Dsui_0556 and Dsui_0557 are separated by 26 nucleotides Dsui_0557 and Dsui_0558 overlap by 33 nucleotides Dsui_0558 and Dsui_0559 are separated by 180 nucleotides Dsui_0559 and Dsui_0560 are separated by 365 nucleotides
Dsui_0555: Dsui_0555 - hypothetical protein, at 557,404 to 557,784
_0555
Dsui_0556: Dsui_0556 - ferredoxin III, nif-specific, at 557,806 to 558,105
_0556
Dsui_0557: Dsui_0557 - NifQ, at 558,132 to 558,557
_0557
Dsui_0558: Dsui_0558 - tetratricopeptide repeat protein, at 558,525 to 559,973
_0558
Dsui_0559: Dsui_0559 - alkylphosphonate utilization operon protein PhnA, at 560,154 to 560,495
_0559
Dsui_0560: Dsui_0560 - molybdenum-pterin binding domain protein, at 560,861 to 561,289
_0560
Position (kb) 558
559
560 Strain fitness (log2 ratio) -2
-1
0
1 at 557.534 kb on - strand, within Dsui_0555 at 557.641 kb on + strand, within Dsui_0555 at 557.753 kb on + strand at 557.770 kb on + strand at 557.829 kb on + strand at 557.848 kb on + strand, within Dsui_0556 at 558.041 kb on + strand, within Dsui_0556 at 558.083 kb on + strand at 558.247 kb on - strand, within Dsui_0557 at 558.323 kb on - strand, within Dsui_0557 at 558.393 kb on + strand, within Dsui_0557 at 558.441 kb on + strand, within Dsui_0557 at 558.477 kb on - strand, within Dsui_0557 at 558.540 kb on - strand at 558.581 kb on - strand at 558.581 kb on - strand at 558.629 kb on + strand at 559.118 kb on - strand, within Dsui_0558 at 559.172 kb on - strand, within Dsui_0558 at 559.224 kb on + strand, within Dsui_0558 at 559.284 kb on + strand, within Dsui_0558 at 559.321 kb on - strand, within Dsui_0558 at 559.362 kb on - strand, within Dsui_0558 at 559.368 kb on - strand, within Dsui_0558 at 559.535 kb on + strand at 559.543 kb on - strand at 559.593 kb on + strand at 559.601 kb on - strand at 559.651 kb on - strand at 559.651 kb on - strand at 559.674 kb on - strand at 559.705 kb on - strand, within Dsui_0558 at 559.901 kb on + strand at 559.903 kb on - strand at 559.970 kb on - strand at 560.050 kb on - strand at 560.052 kb on + strand at 560.073 kb on + strand at 560.115 kb on - strand at 560.152 kb on + strand at 560.160 kb on - strand at 560.160 kb on - strand at 560.183 kb on - strand at 560.206 kb on - strand, within Dsui_0559 at 560.250 kb on - strand, within Dsui_0559 at 560.287 kb on + strand, within Dsui_0559 at 560.287 kb on + strand, within Dsui_0559 at 560.295 kb on - strand, within Dsui_0559 at 560.372 kb on - strand, within Dsui_0559 at 560.403 kb on - strand, within Dsui_0559 at 560.486 kb on + strand at 560.494 kb on - strand at 560.494 kb on - strand at 560.499 kb on + strand at 560.499 kb on - strand at 560.615 kb on - strand at 560.656 kb on + strand at 560.656 kb on + strand at 560.773 kb on + strand at 560.773 kb on + strand at 560.773 kb on + strand at 560.789 kb on - strand at 560.832 kb on + strand at 560.867 kb on - strand at 560.873 kb on + strand at 560.881 kb on - strand at 560.881 kb on - strand at 560.897 kb on + strand at 560.905 kb on - strand, within Dsui_0560 at 560.926 kb on - strand, within Dsui_0560
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 557,534 - Dsui_0555 0.34 +0.4 557,641 + Dsui_0555 0.62 -1.1 557,753 + -1.6 557,770 + +0.4 557,829 + -0.6 557,848 + Dsui_0556 0.14 +0.4 558,041 + Dsui_0556 0.78 +0.4 558,083 + +0.4 558,247 - Dsui_0557 0.27 -2.1 558,323 - Dsui_0557 0.45 -1.1 558,393 + Dsui_0557 0.61 +0.4 558,441 + Dsui_0557 0.73 -0.6 558,477 - Dsui_0557 0.81 -1.6 558,540 - -0.6 558,581 - -0.6 558,581 - +0.4 558,629 + -2.1 559,118 - Dsui_0558 0.41 -1.6 559,172 - Dsui_0558 0.45 -0.6 559,224 + Dsui_0558 0.48 -1.1 559,284 + Dsui_0558 0.52 -2.6 559,321 - Dsui_0558 0.55 -0.6 559,362 - Dsui_0558 0.58 -2.1 559,368 - Dsui_0558 0.58 +0.4 559,535 + +0.4 559,543 - -0.6 559,593 + -0.6 559,601 - -0.6 559,651 - -0.6 559,651 - +0.4 559,674 - +0.4 559,705 - Dsui_0558 0.81 -1.6 559,901 + -1.1 559,903 - +0.4 559,970 - -1.1 560,050 - -1.6 560,052 + -2.4 560,073 + -0.6 560,115 - -0.2 560,152 + +0.4 560,160 - -0.2 560,160 - +0.7 560,183 - +0.1 560,206 - Dsui_0559 0.15 -0.3 560,250 - Dsui_0559 0.28 -0.4 560,287 + Dsui_0559 0.39 +0.4 560,287 + Dsui_0559 0.39 +0.4 560,295 - Dsui_0559 0.41 +0.1 560,372 - Dsui_0559 0.64 -0.3 560,403 - Dsui_0559 0.73 -0.8 560,486 + +0.4 560,494 - +0.5 560,494 - -0.7 560,499 + -0.6 560,499 - -0.6 560,615 - +0.4 560,656 + +0.4 560,656 + -0.6 560,773 + -0.6 560,773 + -0.6 560,773 + -1.6 560,789 - -1.1 560,832 + -0.6 560,867 - -2.1 560,873 + +0.4 560,881 - -0.0 560,881 - +0.5 560,897 + -2.1 560,905 - Dsui_0560 0.10 -0.4 560,926 - Dsui_0560 0.15 -0.5
Or see this region's nucleotide sequence