Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0533 and Dsui_0534 are separated by 7 nucleotides Dsui_0534 and Dsui_0535 are separated by 31 nucleotides Dsui_0535 and Dsui_0536 are separated by 10 nucleotides
Dsui_0533: Dsui_0533 - cobyrinic acid a,c-diamide synthase, at 538,485 to 539,792
_0533
Dsui_0534: Dsui_0534 - hypothetical protein, at 539,800 to 540,027
_0534
Dsui_0535: Dsui_0535 - hypothetical protein, at 540,059 to 540,304
_0535
Dsui_0536: Dsui_0536 - hemerythrin-like metal-binding domain-containing protein, at 540,315 to 541,775
_0536
Position (kb) 539
540
541 Strain fitness (log2 ratio) -2
-1
0
1 at 538.843 kb on + strand, within Dsui_0533 at 538.876 kb on + strand, within Dsui_0533 at 538.902 kb on - strand at 538.986 kb on - strand at 539.061 kb on + strand, within Dsui_0533 at 539.409 kb on - strand, within Dsui_0533 at 539.521 kb on + strand, within Dsui_0533 at 539.577 kb on - strand at 539.689 kb on + strand at 539.719 kb on - strand at 540.029 kb on - strand at 540.029 kb on - strand at 540.039 kb on + strand at 540.094 kb on - strand, within Dsui_0535 at 540.199 kb on + strand, within Dsui_0535 at 540.444 kb on + strand at 540.537 kb on + strand, within Dsui_0536 at 540.671 kb on - strand, within Dsui_0536 at 540.734 kb on + strand, within Dsui_0536 at 540.767 kb on - strand, within Dsui_0536 at 540.787 kb on - strand, within Dsui_0536 at 540.943 kb on + strand, within Dsui_0536 at 540.999 kb on - strand, within Dsui_0536 at 540.999 kb on - strand at 541.001 kb on + strand at 541.009 kb on - strand, within Dsui_0536
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 538,843 + Dsui_0533 0.27 -1.1 538,876 + Dsui_0533 0.30 -2.1 538,902 - +0.5 538,986 - +0.5 539,061 + Dsui_0533 0.44 -0.2 539,409 - Dsui_0533 0.71 -1.1 539,521 + Dsui_0533 0.79 -0.5 539,577 - +0.5 539,689 + -0.3 539,719 - -0.5 540,029 - +0.5 540,029 - -2.1 540,039 + -0.5 540,094 - Dsui_0535 0.14 +0.5 540,199 + Dsui_0535 0.57 -0.5 540,444 + -0.1 540,537 + Dsui_0536 0.15 -0.5 540,671 - Dsui_0536 0.24 +0.5 540,734 + Dsui_0536 0.29 -2.5 540,767 - Dsui_0536 0.31 -1.1 540,787 - Dsui_0536 0.32 +0.5 540,943 + Dsui_0536 0.43 -0.5 540,999 - Dsui_0536 0.47 -1.1 540,999 - +0.5 541,001 + +0.5 541,009 - Dsui_0536 0.48 -0.5
Or see this region's nucleotide sequence