Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0408 and Dsui_0409 overlap by 4 nucleotides Dsui_0409 and Dsui_0410 are separated by 26 nucleotides
Dsui_0408: Dsui_0408 - cation/multidrug efflux pump, at 406,249 to 409,452
_0408
Dsui_0409: Dsui_0409 - RND family efflux transporter, MFP subunit, at 409,449 to 410,603
_0409
Dsui_0410: Dsui_0410 - transcriptional regulator, at 410,630 to 411,265
_0410
Position (kb) 409
410
411 Strain fitness (log2 ratio) -2
-1
0
1 at 408.467 kb on + strand, within Dsui_0408 at 408.495 kb on + strand, within Dsui_0408 at 408.495 kb on + strand at 408.681 kb on + strand, within Dsui_0408 at 408.771 kb on + strand, within Dsui_0408 at 408.884 kb on + strand, within Dsui_0408 at 408.962 kb on + strand, within Dsui_0408 at 408.999 kb on - strand, within Dsui_0408 at 409.009 kb on - strand, within Dsui_0408 at 409.024 kb on + strand, within Dsui_0408 at 409.055 kb on - strand, within Dsui_0408 at 409.062 kb on + strand at 409.070 kb on + strand at 409.078 kb on - strand, within Dsui_0408 at 409.113 kb on + strand, within Dsui_0408 at 409.113 kb on + strand, within Dsui_0408 at 409.154 kb on + strand at 409.160 kb on + strand at 409.265 kb on - strand at 409.272 kb on + strand at 409.350 kb on + strand at 409.378 kb on + strand at 409.609 kb on + strand at 409.617 kb on - strand, within Dsui_0409 at 409.631 kb on + strand, within Dsui_0409 at 409.669 kb on + strand, within Dsui_0409 at 409.697 kb on - strand, within Dsui_0409 at 409.747 kb on - strand, within Dsui_0409 at 409.747 kb on - strand, within Dsui_0409 at 409.852 kb on - strand, within Dsui_0409 at 409.908 kb on - strand, within Dsui_0409 at 409.980 kb on - strand, within Dsui_0409 at 410.171 kb on - strand, within Dsui_0409 at 410.252 kb on + strand, within Dsui_0409 at 410.499 kb on + strand at 410.558 kb on - strand at 410.806 kb on + strand at 410.961 kb on - strand, within Dsui_0410 at 411.260 kb on + strand at 411.336 kb on - strand at 411.406 kb on - strand at 411.472 kb on - strand at 411.472 kb on - strand at 411.495 kb on + strand at 411.550 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 408,467 + Dsui_0408 0.69 -1.1 408,495 + Dsui_0408 0.70 +0.5 408,495 + +0.5 408,681 + Dsui_0408 0.76 -0.5 408,771 + Dsui_0408 0.79 -0.5 408,884 + Dsui_0408 0.82 -2.5 408,962 + Dsui_0408 0.85 -0.5 408,999 - Dsui_0408 0.86 +0.2 409,009 - Dsui_0408 0.86 -1.1 409,024 + Dsui_0408 0.87 -1.5 409,055 - Dsui_0408 0.88 -0.3 409,062 + -1.1 409,070 + -0.5 409,078 - Dsui_0408 0.88 +0.0 409,113 + Dsui_0408 0.89 -1.8 409,113 + Dsui_0408 0.89 -0.5 409,154 + -0.5 409,160 + -1.5 409,265 - +0.4 409,272 + -1.5 409,350 + +0.5 409,378 + -1.8 409,609 + +0.5 409,617 - Dsui_0409 0.15 -0.4 409,631 + Dsui_0409 0.16 -0.5 409,669 + Dsui_0409 0.19 +0.5 409,697 - Dsui_0409 0.21 -0.7 409,747 - Dsui_0409 0.26 -1.8 409,747 - Dsui_0409 0.26 -0.2 409,852 - Dsui_0409 0.35 -0.1 409,908 - Dsui_0409 0.40 +0.3 409,980 - Dsui_0409 0.46 +0.1 410,171 - Dsui_0409 0.63 -0.1 410,252 + Dsui_0409 0.70 -0.5 410,499 + -0.5 410,558 - +0.4 410,806 + +0.5 410,961 - Dsui_0410 0.52 +0.4 411,260 + +0.5 411,336 - +0.5 411,406 - -1.1 411,472 - -0.5 411,472 - +0.5 411,495 + +0.5 411,550 - -1.1
Or see this region's nucleotide sequence