Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0406 and Dsui_0407 are separated by 9 nucleotides Dsui_0407 and Dsui_0408 are separated by 65 nucleotides Dsui_0408 and Dsui_0409 overlap by 4 nucleotides
Dsui_0406: Dsui_0406 - Rhodanese-related sulfurtransferase, at 405,185 to 405,508
_0406
Dsui_0407: Dsui_0407 - protein-L-isoaspartate carboxylmethyltransferase, at 405,518 to 406,183
_0407
Dsui_0408: Dsui_0408 - cation/multidrug efflux pump, at 406,249 to 409,452
_0408
Dsui_0409: Dsui_0409 - RND family efflux transporter, MFP subunit, at 409,449 to 410,603
_0409
Position (kb) 406
407
408
409
410 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 405.286 kb on - strand, within Dsui_0406 at 405.359 kb on + strand, within Dsui_0406 at 405.367 kb on - strand, within Dsui_0406 at 405.683 kb on - strand, within Dsui_0407 at 406.345 kb on + strand at 406.394 kb on - strand at 406.451 kb on - strand at 406.498 kb on + strand at 406.571 kb on - strand, within Dsui_0408 at 406.613 kb on - strand, within Dsui_0408 at 406.713 kb on + strand, within Dsui_0408 at 406.799 kb on + strand, within Dsui_0408 at 406.812 kb on + strand, within Dsui_0408 at 406.838 kb on + strand, within Dsui_0408 at 406.844 kb on - strand, within Dsui_0408 at 406.846 kb on - strand, within Dsui_0408 at 406.856 kb on - strand, within Dsui_0408 at 406.872 kb on + strand at 406.907 kb on - strand, within Dsui_0408 at 406.946 kb on - strand, within Dsui_0408 at 406.980 kb on + strand, within Dsui_0408 at 407.103 kb on - strand, within Dsui_0408 at 407.151 kb on - strand, within Dsui_0408 at 407.162 kb on + strand at 407.180 kb on - strand, within Dsui_0408 at 407.180 kb on - strand, within Dsui_0408 at 407.210 kb on + strand, within Dsui_0408 at 407.210 kb on + strand, within Dsui_0408 at 407.220 kb on + strand, within Dsui_0408 at 407.318 kb on - strand, within Dsui_0408 at 407.582 kb on + strand at 407.687 kb on + strand, within Dsui_0408 at 407.861 kb on + strand, within Dsui_0408 at 408.190 kb on + strand, within Dsui_0408 at 408.190 kb on + strand, within Dsui_0408 at 408.191 kb on + strand, within Dsui_0408 at 408.199 kb on - strand, within Dsui_0408 at 408.204 kb on - strand, within Dsui_0408 at 408.297 kb on + strand, within Dsui_0408 at 408.394 kb on - strand, within Dsui_0408 at 408.467 kb on + strand, within Dsui_0408 at 408.495 kb on + strand, within Dsui_0408 at 408.495 kb on + strand at 408.681 kb on + strand, within Dsui_0408 at 408.771 kb on + strand, within Dsui_0408 at 408.884 kb on + strand, within Dsui_0408 at 408.962 kb on + strand, within Dsui_0408 at 408.999 kb on - strand, within Dsui_0408 at 409.009 kb on - strand, within Dsui_0408 at 409.024 kb on + strand, within Dsui_0408 at 409.055 kb on - strand, within Dsui_0408 at 409.062 kb on + strand at 409.070 kb on + strand at 409.078 kb on - strand, within Dsui_0408 at 409.113 kb on + strand, within Dsui_0408 at 409.113 kb on + strand, within Dsui_0408 at 409.154 kb on + strand at 409.160 kb on + strand at 409.265 kb on - strand at 409.272 kb on + strand at 409.350 kb on + strand at 409.378 kb on + strand at 409.609 kb on + strand at 409.617 kb on - strand, within Dsui_0409 at 409.631 kb on + strand, within Dsui_0409 at 409.669 kb on + strand, within Dsui_0409 at 409.697 kb on - strand, within Dsui_0409 at 409.747 kb on - strand, within Dsui_0409 at 409.747 kb on - strand, within Dsui_0409 at 409.852 kb on - strand, within Dsui_0409 at 409.908 kb on - strand, within Dsui_0409 at 409.980 kb on - strand, within Dsui_0409 at 410.171 kb on - strand, within Dsui_0409 at 410.252 kb on + strand, within Dsui_0409
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 405,286 - Dsui_0406 0.31 +0.3 405,359 + Dsui_0406 0.54 -1.8 405,367 - Dsui_0406 0.56 -0.3 405,683 - Dsui_0407 0.25 -0.5 406,345 + +0.5 406,394 - +0.3 406,451 - -0.1 406,498 + -0.5 406,571 - Dsui_0408 0.10 +0.1 406,613 - Dsui_0408 0.11 -0.0 406,713 + Dsui_0408 0.14 -0.5 406,799 + Dsui_0408 0.17 -1.1 406,812 + Dsui_0408 0.18 -0.5 406,838 + Dsui_0408 0.18 -1.8 406,844 - Dsui_0408 0.19 -0.0 406,846 - Dsui_0408 0.19 +1.3 406,856 - Dsui_0408 0.19 -0.2 406,872 + +0.5 406,907 - Dsui_0408 0.21 -0.3 406,946 - Dsui_0408 0.22 -0.8 406,980 + Dsui_0408 0.23 -3.4 407,103 - Dsui_0408 0.27 -0.9 407,151 - Dsui_0408 0.28 +1.1 407,162 + +0.5 407,180 - Dsui_0408 0.29 +0.4 407,180 - Dsui_0408 0.29 +0.3 407,210 + Dsui_0408 0.30 -1.1 407,210 + Dsui_0408 0.30 -0.5 407,220 + Dsui_0408 0.30 +0.5 407,318 - Dsui_0408 0.33 +0.0 407,582 + +0.5 407,687 + Dsui_0408 0.45 -1.8 407,861 + Dsui_0408 0.50 -1.8 408,190 + Dsui_0408 0.61 -1.1 408,190 + Dsui_0408 0.61 +0.5 408,191 + Dsui_0408 0.61 +0.5 408,199 - Dsui_0408 0.61 +1.2 408,204 - Dsui_0408 0.61 -0.4 408,297 + Dsui_0408 0.64 +0.5 408,394 - Dsui_0408 0.67 +0.1 408,467 + Dsui_0408 0.69 -1.1 408,495 + Dsui_0408 0.70 +0.5 408,495 + +0.5 408,681 + Dsui_0408 0.76 -0.5 408,771 + Dsui_0408 0.79 -0.5 408,884 + Dsui_0408 0.82 -2.5 408,962 + Dsui_0408 0.85 -0.5 408,999 - Dsui_0408 0.86 +0.2 409,009 - Dsui_0408 0.86 -1.1 409,024 + Dsui_0408 0.87 -1.5 409,055 - Dsui_0408 0.88 -0.3 409,062 + -1.1 409,070 + -0.5 409,078 - Dsui_0408 0.88 +0.0 409,113 + Dsui_0408 0.89 -1.8 409,113 + Dsui_0408 0.89 -0.5 409,154 + -0.5 409,160 + -1.5 409,265 - +0.4 409,272 + -1.5 409,350 + +0.5 409,378 + -1.8 409,609 + +0.5 409,617 - Dsui_0409 0.15 -0.4 409,631 + Dsui_0409 0.16 -0.5 409,669 + Dsui_0409 0.19 +0.5 409,697 - Dsui_0409 0.21 -0.7 409,747 - Dsui_0409 0.26 -1.8 409,747 - Dsui_0409 0.26 -0.2 409,852 - Dsui_0409 0.35 -0.1 409,908 - Dsui_0409 0.40 +0.3 409,980 - Dsui_0409 0.46 +0.1 410,171 - Dsui_0409 0.63 -0.1 410,252 + Dsui_0409 0.70 -0.5
Or see this region's nucleotide sequence