Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0285 and Dsui_0286 overlap by 4 nucleotides Dsui_0286 and Dsui_0287 are separated by 237 nucleotides Dsui_0287 and Dsui_0288 are separated by 52 nucleotides Dsui_0288 and Dsui_0289 are separated by 443 nucleotides Dsui_0289 and Dsui_0290 overlap by 4 nucleotides
Dsui_0285: Dsui_0285 - methionine aminopeptidase, type I, at 285,562 to 286,386
_0285
Dsui_0286: Dsui_0286 - Protein of unknown function (DUF3423), at 286,383 to 286,613
_0286
Dsui_0287: Dsui_0287 - outer membrane protein/peptidoglycan-associated (lipo)protein, at 286,851 to 287,327
_0287
Dsui_0288: Dsui_0288 - hypothetical protein, at 287,380 to 287,595
_0288
Dsui_0289: Dsui_0289 - putative membrane protein, at 288,039 to 288,356
_0289
Dsui_0290: Dsui_0290 - SSS sodium solute transporter, at 288,353 to 290,101
_0290
Position (kb) 287
288 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 286.425 kb on + strand at 286.425 kb on + strand at 286.433 kb on - strand, within Dsui_0286 at 286.471 kb on + strand at 286.471 kb on + strand, within Dsui_0286 at 286.479 kb on - strand, within Dsui_0286 at 286.479 kb on - strand, within Dsui_0286 at 286.479 kb on - strand, within Dsui_0286 at 286.479 kb on - strand, within Dsui_0286 at 286.484 kb on - strand, within Dsui_0286 at 286.489 kb on - strand, within Dsui_0286 at 286.489 kb on - strand, within Dsui_0286 at 286.548 kb on + strand, within Dsui_0286 at 286.548 kb on + strand, within Dsui_0286 at 286.556 kb on - strand, within Dsui_0286 at 286.608 kb on + strand at 286.616 kb on - strand at 286.616 kb on - strand at 286.618 kb on + strand at 286.669 kb on + strand at 286.674 kb on + strand at 286.674 kb on + strand at 286.674 kb on + strand at 286.674 kb on + strand at 286.682 kb on - strand at 286.682 kb on - strand at 286.682 kb on - strand at 286.744 kb on - strand at 286.788 kb on + strand at 286.791 kb on - strand at 287.172 kb on + strand, within Dsui_0287 at 287.194 kb on - strand, within Dsui_0287 at 287.303 kb on + strand at 287.469 kb on + strand, within Dsui_0288 at 287.479 kb on + strand, within Dsui_0288 at 287.487 kb on - strand, within Dsui_0288 at 287.506 kb on + strand, within Dsui_0288 at 287.531 kb on + strand, within Dsui_0288 at 287.539 kb on - strand, within Dsui_0288 at 287.563 kb on - strand, within Dsui_0288 at 287.565 kb on + strand, within Dsui_0288 at 287.565 kb on + strand, within Dsui_0288 at 287.565 kb on + strand, within Dsui_0288 at 287.575 kb on + strand at 287.584 kb on + strand at 287.699 kb on + strand at 287.744 kb on + strand at 287.744 kb on + strand at 287.747 kb on - strand at 288.046 kb on + strand at 288.047 kb on + strand at 288.051 kb on + strand at 288.051 kb on + strand at 288.059 kb on - strand at 288.099 kb on + strand, within Dsui_0289 at 288.204 kb on - strand, within Dsui_0289 at 288.243 kb on + strand, within Dsui_0289 at 288.323 kb on - strand, within Dsui_0289 at 288.333 kb on + strand at 288.379 kb on - strand at 288.386 kb on + strand at 288.387 kb on + strand at 288.392 kb on + strand at 288.395 kb on - strand at 288.395 kb on - strand at 288.449 kb on + strand at 288.502 kb on + strand at 288.555 kb on - strand, within Dsui_0290 at 288.555 kb on - strand, within Dsui_0290
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 286,425 + -0.5 286,425 + +0.5 286,433 - Dsui_0286 0.22 +0.2 286,471 + -1.1 286,471 + Dsui_0286 0.38 -1.5 286,479 - Dsui_0286 0.42 -0.0 286,479 - Dsui_0286 0.42 -0.3 286,479 - Dsui_0286 0.42 +0.2 286,479 - Dsui_0286 0.42 +0.3 286,484 - Dsui_0286 0.44 -0.3 286,489 - Dsui_0286 0.46 -0.1 286,489 - Dsui_0286 0.46 -0.3 286,548 + Dsui_0286 0.71 -0.1 286,548 + Dsui_0286 0.71 +0.5 286,556 - Dsui_0286 0.75 -0.1 286,608 + +0.5 286,616 - +0.3 286,616 - -0.5 286,618 + +0.5 286,669 + -0.5 286,674 + -1.8 286,674 + -0.5 286,674 + -1.1 286,674 + +0.5 286,682 - +0.5 286,682 - -1.1 286,682 - +0.5 286,744 - -1.1 286,788 + +0.2 286,791 - -1.8 287,172 + Dsui_0287 0.67 +0.2 287,194 - Dsui_0287 0.72 -1.1 287,303 + -0.0 287,469 + Dsui_0288 0.41 -0.1 287,479 + Dsui_0288 0.46 -0.2 287,487 - Dsui_0288 0.50 -2.1 287,506 + Dsui_0288 0.58 -0.2 287,531 + Dsui_0288 0.70 -0.2 287,539 - Dsui_0288 0.74 -2.1 287,563 - Dsui_0288 0.85 -1.5 287,565 + Dsui_0288 0.86 -0.0 287,565 + Dsui_0288 0.86 -0.1 287,565 + Dsui_0288 0.86 +0.8 287,575 + -0.3 287,584 + +0.3 287,699 + -0.1 287,744 + +0.5 287,744 + -2.5 287,747 - -3.5 288,046 + +1.3 288,047 + +0.8 288,051 + -0.7 288,051 + -0.5 288,059 - -1.1 288,099 + Dsui_0289 0.19 -1.3 288,204 - Dsui_0289 0.52 -0.5 288,243 + Dsui_0289 0.64 -1.1 288,323 - Dsui_0289 0.89 -0.5 288,333 + -2.7 288,379 - -0.5 288,386 + +0.1 288,387 + -0.5 288,392 + +0.4 288,395 - -0.5 288,395 - +0.5 288,449 + -1.1 288,502 + +0.1 288,555 - Dsui_0290 0.12 -1.1 288,555 - Dsui_0290 0.12 -0.5
Or see this region's nucleotide sequence