Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0269 and Dsui_0270 are separated by 8 nucleotides Dsui_0270 and Dsui_0271 are separated by 77 nucleotides Dsui_0271 and Dsui_0272 overlap by 4 nucleotides
Dsui_0269: Dsui_0269 - ABC-type multidrug transport system, permease component, at 270,523 to 271,659
_0269
Dsui_0270: Dsui_0270 - transcriptional regulator, at 271,668 to 272,336
_0270
Dsui_0271: Dsui_0271 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 272,414 to 273,121
_0271
Dsui_0272: Dsui_0272 - osmosensitive K+ channel histidine kinase, at 273,118 to 275,814
_0272
Position (kb) 272
273
274 Strain fitness (log2 ratio) -2
-1
0
1 at 271.529 kb on - strand, within Dsui_0269 at 271.653 kb on + strand at 271.661 kb on - strand at 271.844 kb on - strand, within Dsui_0270 at 272.039 kb on + strand, within Dsui_0270 at 272.039 kb on + strand, within Dsui_0270 at 272.047 kb on - strand, within Dsui_0270 at 272.167 kb on + strand, within Dsui_0270 at 272.226 kb on + strand, within Dsui_0270 at 272.478 kb on + strand at 272.502 kb on + strand at 272.751 kb on + strand at 272.830 kb on + strand, within Dsui_0271 at 272.988 kb on - strand, within Dsui_0271 at 273.012 kb on + strand, within Dsui_0271 at 273.012 kb on + strand, within Dsui_0271 at 273.020 kb on - strand, within Dsui_0271 at 273.034 kb on - strand, within Dsui_0271 at 273.034 kb on - strand, within Dsui_0271 at 273.402 kb on + strand, within Dsui_0272 at 273.420 kb on - strand, within Dsui_0272 at 273.459 kb on - strand, within Dsui_0272 at 273.532 kb on + strand at 273.540 kb on - strand at 273.585 kb on - strand, within Dsui_0272 at 273.607 kb on + strand at 273.615 kb on - strand, within Dsui_0272 at 273.729 kb on + strand at 273.799 kb on - strand, within Dsui_0272 at 273.842 kb on + strand, within Dsui_0272 at 273.999 kb on - strand, within Dsui_0272 at 274.014 kb on - strand, within Dsui_0272
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 271,529 - Dsui_0269 0.88 +0.5 271,653 + +1.0 271,661 - +0.5 271,844 - Dsui_0270 0.26 -1.5 272,039 + Dsui_0270 0.55 +0.4 272,039 + Dsui_0270 0.55 -0.5 272,047 - Dsui_0270 0.57 +0.5 272,167 + Dsui_0270 0.75 -0.6 272,226 + Dsui_0270 0.83 +0.6 272,478 + -1.1 272,502 + -0.5 272,751 + +0.5 272,830 + Dsui_0271 0.59 -1.5 272,988 - Dsui_0271 0.81 -2.3 273,012 + Dsui_0271 0.84 -0.5 273,012 + Dsui_0271 0.84 +0.5 273,020 - Dsui_0271 0.86 +0.5 273,034 - Dsui_0271 0.88 -1.5 273,034 - Dsui_0271 0.88 -1.5 273,402 + Dsui_0272 0.11 -1.1 273,420 - Dsui_0272 0.11 -0.4 273,459 - Dsui_0272 0.13 -1.8 273,532 + +0.5 273,540 - -0.5 273,585 - Dsui_0272 0.17 -0.5 273,607 + -0.5 273,615 - Dsui_0272 0.18 +0.5 273,729 + +0.5 273,799 - Dsui_0272 0.25 +0.5 273,842 + Dsui_0272 0.27 -1.1 273,999 - Dsui_0272 0.33 -0.5 274,014 - Dsui_0272 0.33 -2.5
Or see this region's nucleotide sequence