Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0212 and Dsui_0213 overlap by 8 nucleotides Dsui_0213 and Dsui_0214 overlap by 14 nucleotides Dsui_0214 and Dsui_0215 are separated by 2 nucleotides Dsui_0215 and Dsui_0216 overlap by 4 nucleotides Dsui_0216 and Dsui_0217 overlap by 4 nucleotides Dsui_0217 and Dsui_0218 overlap by 62 nucleotides
Dsui_0212: Dsui_0212 - hypothetical protein, at 213,889 to 214,266
_0212
Dsui_0213: Dsui_0213 - hypothetical protein, at 214,259 to 214,603
_0213
Dsui_0214: Dsui_0214 - TIGR02594 family protein, at 214,590 to 215,081
_0214
Dsui_0215: Dsui_0215 - hypothetical protein, at 215,084 to 215,500
_0215
Dsui_0216: Dsui_0216 - hypothetical protein, at 215,497 to 215,766
_0216
Dsui_0217: Dsui_0217 - hypothetical protein, at 215,763 to 215,936
_0217
Dsui_0218: Dsui_0218 - Integrase, at 215,875 to 217,176
_0218
Position (kb) 215
216 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 214.242 kb on + strand at 214.242 kb on + strand at 214.284 kb on + strand at 214.301 kb on + strand, within Dsui_0213 at 214.312 kb on - strand at 214.316 kb on + strand, within Dsui_0213 at 214.324 kb on - strand, within Dsui_0213 at 214.324 kb on - strand, within Dsui_0213 at 214.324 kb on - strand at 214.349 kb on - strand at 214.429 kb on - strand at 214.621 kb on + strand at 214.627 kb on + strand at 214.671 kb on + strand at 214.675 kb on + strand, within Dsui_0214 at 214.691 kb on + strand, within Dsui_0214 at 214.816 kb on + strand, within Dsui_0214 at 214.830 kb on + strand, within Dsui_0214 at 214.981 kb on - strand, within Dsui_0214 at 215.216 kb on - strand, within Dsui_0215 at 215.226 kb on - strand, within Dsui_0215 at 215.365 kb on - strand at 215.450 kb on + strand, within Dsui_0215 at 215.482 kb on + strand at 215.494 kb on + strand at 215.495 kb on - strand at 215.626 kb on + strand, within Dsui_0216 at 215.685 kb on + strand at 215.729 kb on + strand, within Dsui_0216 at 215.757 kb on - strand at 215.760 kb on + strand at 215.856 kb on + strand, within Dsui_0217 at 215.886 kb on + strand at 215.894 kb on - strand at 215.965 kb on - strand at 215.988 kb on + strand at 216.049 kb on + strand, within Dsui_0218 at 216.057 kb on - strand, within Dsui_0218 at 216.057 kb on - strand, within Dsui_0218 at 216.121 kb on - strand, within Dsui_0218 at 216.130 kb on - strand, within Dsui_0218 at 216.201 kb on - strand, within Dsui_0218 at 216.300 kb on + strand, within Dsui_0218 at 216.352 kb on - strand, within Dsui_0218 at 216.433 kb on - strand, within Dsui_0218 at 216.443 kb on - strand, within Dsui_0218 at 216.443 kb on - strand, within Dsui_0218 at 216.443 kb on - strand, within Dsui_0218
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 214,242 + +0.5 214,242 + -0.5 214,284 + -0.5 214,301 + Dsui_0213 0.12 -0.5 214,312 - +0.5 214,316 + Dsui_0213 0.17 -0.5 214,324 - Dsui_0213 0.19 -0.1 214,324 - Dsui_0213 0.19 +0.5 214,324 - +0.5 214,349 - +0.5 214,429 - +0.5 214,621 + -1.8 214,627 + -0.5 214,671 + -0.5 214,675 + Dsui_0214 0.17 +0.5 214,691 + Dsui_0214 0.21 +0.5 214,816 + Dsui_0214 0.46 -0.5 214,830 + Dsui_0214 0.49 -0.5 214,981 - Dsui_0214 0.79 -0.5 215,216 - Dsui_0215 0.32 -1.1 215,226 - Dsui_0215 0.34 -1.1 215,365 - +0.5 215,450 + Dsui_0215 0.88 -0.5 215,482 + +3.9 215,494 + +0.5 215,495 - -1.5 215,626 + Dsui_0216 0.48 -1.5 215,685 + -0.5 215,729 + Dsui_0216 0.86 -1.1 215,757 - +1.5 215,760 + +0.5 215,856 + Dsui_0217 0.53 +0.5 215,886 + -2.5 215,894 - +2.8 215,965 - +2.9 215,988 + +0.5 216,049 + Dsui_0218 0.13 -2.7 216,057 - Dsui_0218 0.14 +1.1 216,057 - Dsui_0218 0.14 +0.7 216,121 - Dsui_0218 0.19 +0.7 216,130 - Dsui_0218 0.20 -0.4 216,201 - Dsui_0218 0.25 +0.6 216,300 + Dsui_0218 0.33 +1.3 216,352 - Dsui_0218 0.37 +1.4 216,433 - Dsui_0218 0.43 +0.6 216,443 - Dsui_0218 0.44 +0.9 216,443 - Dsui_0218 0.44 +0.6 216,443 - Dsui_0218 0.44 +0.7
Or see this region's nucleotide sequence