Experiment: ALP with Cisplatin 0.0008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0156 and Dsui_0157 are separated by 10 nucleotides Dsui_0157 and Dsui_0158 are separated by 64 nucleotides Dsui_0158 and Dsui_0160 are separated by 841 nucleotides
Dsui_0156: Dsui_0156 - thiosulfate reductase cytochrome B subunit (membrane anchoring protein), at 161,978 to 162,574
_0156
Dsui_0157: Dsui_0157 - sulfite oxidase-like oxidoreductase, at 162,585 to 163,373
_0157
Dsui_0158: Dsui_0158 - pentapeptide MXKDX repeat protein, at 163,438 to 163,677
_0158
Dsui_0160: Dsui_0160 - hypothetical protein, at 164,519 to 165,292
_0160
Position (kb) 163
164 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 162.475 kb on + strand, within Dsui_0156 at 162.485 kb on - strand, within Dsui_0156 at 162.510 kb on + strand, within Dsui_0156 at 162.518 kb on - strand at 162.528 kb on - strand at 162.528 kb on - strand at 162.534 kb on - strand at 162.543 kb on - strand at 162.593 kb on - strand at 162.612 kb on - strand at 162.748 kb on + strand, within Dsui_0157 at 162.774 kb on - strand, within Dsui_0157 at 162.810 kb on - strand, within Dsui_0157 at 162.827 kb on + strand, within Dsui_0157 at 162.831 kb on - strand, within Dsui_0157 at 162.847 kb on + strand, within Dsui_0157 at 162.847 kb on + strand, within Dsui_0157 at 162.881 kb on - strand, within Dsui_0157 at 162.914 kb on - strand, within Dsui_0157 at 162.934 kb on + strand, within Dsui_0157 at 162.936 kb on - strand, within Dsui_0157 at 162.956 kb on - strand, within Dsui_0157 at 162.995 kb on - strand, within Dsui_0157 at 163.020 kb on + strand, within Dsui_0157 at 163.020 kb on + strand, within Dsui_0157 at 163.022 kb on + strand, within Dsui_0157 at 163.046 kb on - strand, within Dsui_0157 at 163.073 kb on - strand, within Dsui_0157 at 163.081 kb on - strand, within Dsui_0157 at 163.084 kb on + strand, within Dsui_0157 at 163.084 kb on + strand, within Dsui_0157 at 163.084 kb on + strand, within Dsui_0157 at 163.092 kb on - strand, within Dsui_0157 at 163.099 kb on + strand, within Dsui_0157 at 163.146 kb on + strand, within Dsui_0157 at 163.153 kb on - strand, within Dsui_0157 at 163.212 kb on + strand, within Dsui_0157 at 163.274 kb on - strand, within Dsui_0157 at 163.316 kb on + strand at 163.319 kb on - strand at 163.322 kb on - strand at 163.324 kb on - strand at 163.330 kb on - strand at 163.341 kb on + strand at 163.341 kb on + strand at 163.347 kb on + strand at 163.347 kb on + strand at 163.347 kb on + strand at 163.349 kb on - strand at 163.355 kb on - strand at 163.355 kb on - strand at 163.355 kb on - strand at 163.385 kb on + strand at 163.393 kb on - strand at 163.393 kb on - strand at 163.393 kb on - strand at 163.399 kb on + strand at 163.410 kb on + strand at 163.418 kb on + strand at 163.456 kb on + strand at 163.462 kb on - strand, within Dsui_0158 at 163.466 kb on + strand, within Dsui_0158 at 163.466 kb on + strand, within Dsui_0158 at 163.466 kb on + strand, within Dsui_0158 at 163.466 kb on + strand, within Dsui_0158 at 163.466 kb on + strand, within Dsui_0158 at 163.466 kb on + strand, within Dsui_0158 at 163.472 kb on + strand, within Dsui_0158 at 163.474 kb on - strand, within Dsui_0158 at 163.474 kb on - strand, within Dsui_0158 at 163.474 kb on - strand, within Dsui_0158 at 163.474 kb on - strand, within Dsui_0158 at 163.474 kb on - strand, within Dsui_0158 at 163.474 kb on - strand, within Dsui_0158 at 163.474 kb on - strand, within Dsui_0158 at 163.474 kb on - strand, within Dsui_0158 at 163.474 kb on - strand, within Dsui_0158 at 163.474 kb on - strand, within Dsui_0158 at 163.480 kb on - strand, within Dsui_0158 at 163.524 kb on + strand, within Dsui_0158 at 163.532 kb on - strand, within Dsui_0158 at 163.551 kb on + strand, within Dsui_0158 at 163.551 kb on - strand, within Dsui_0158 at 163.560 kb on + strand, within Dsui_0158 at 163.581 kb on + strand, within Dsui_0158 at 163.589 kb on - strand, within Dsui_0158 at 163.592 kb on - strand, within Dsui_0158 at 163.598 kb on - strand, within Dsui_0158 at 163.656 kb on - strand at 163.678 kb on + strand at 163.712 kb on - strand at 163.730 kb on + strand at 163.744 kb on - strand at 163.764 kb on - strand at 163.775 kb on + strand at 163.775 kb on + strand at 163.775 kb on + strand at 163.783 kb on - strand at 163.783 kb on - strand at 163.783 kb on - strand at 163.805 kb on - strand at 163.810 kb on - strand at 163.828 kb on - strand at 163.831 kb on + strand at 163.831 kb on + strand at 163.831 kb on + strand at 163.831 kb on + strand at 163.831 kb on + strand at 163.831 kb on + strand at 163.831 kb on + strand at 163.831 kb on + strand at 163.832 kb on + strand at 163.832 kb on + strand at 163.839 kb on - strand at 163.839 kb on - strand at 163.839 kb on - strand at 163.839 kb on - strand at 163.839 kb on - strand at 163.867 kb on + strand at 163.873 kb on - strand at 163.873 kb on - strand at 163.878 kb on - strand at 163.884 kb on - strand at 163.913 kb on - strand at 163.925 kb on - strand at 163.957 kb on - strand at 163.970 kb on + strand at 163.978 kb on - strand at 163.978 kb on - strand at 163.980 kb on + strand at 164.009 kb on - strand at 164.010 kb on + strand at 164.025 kb on + strand at 164.025 kb on + strand at 164.051 kb on + strand at 164.059 kb on - strand at 164.068 kb on + strand at 164.110 kb on + strand at 164.124 kb on + strand at 164.128 kb on - strand at 164.138 kb on + strand at 164.149 kb on + strand at 164.149 kb on + strand at 164.149 kb on + strand at 164.149 kb on + strand at 164.149 kb on + strand at 164.157 kb on - strand at 164.157 kb on - strand at 164.157 kb on - strand at 164.157 kb on - strand at 164.157 kb on - strand at 164.209 kb on + strand at 164.240 kb on + strand at 164.251 kb on - strand at 164.251 kb on - strand at 164.251 kb on - strand at 164.260 kb on + strand at 164.263 kb on - strand at 164.263 kb on - strand at 164.272 kb on + strand at 164.292 kb on + strand at 164.328 kb on - strand at 164.328 kb on - strand at 164.333 kb on - strand at 164.346 kb on - strand at 164.360 kb on - strand at 164.388 kb on + strand at 164.396 kb on - strand at 164.417 kb on - strand at 164.425 kb on + strand at 164.441 kb on + strand at 164.463 kb on + strand at 164.474 kb on + strand at 164.474 kb on + strand at 164.475 kb on - strand at 164.482 kb on - strand at 164.482 kb on - strand at 164.482 kb on - strand at 164.493 kb on + strand at 164.496 kb on - strand at 164.500 kb on + strand at 164.501 kb on - strand at 164.501 kb on - strand at 164.501 kb on - strand at 164.507 kb on + strand at 164.507 kb on - strand at 164.515 kb on - strand at 164.526 kb on + strand at 164.534 kb on - strand at 164.556 kb on + strand at 164.559 kb on - strand at 164.593 kb on - strand at 164.600 kb on - strand, within Dsui_0160 at 164.604 kb on - strand, within Dsui_0160 at 164.607 kb on - strand, within Dsui_0160 at 164.610 kb on + strand, within Dsui_0160 at 164.619 kb on - strand, within Dsui_0160 at 164.619 kb on - strand, within Dsui_0160 at 164.661 kb on - strand, within Dsui_0160 at 164.661 kb on - strand, within Dsui_0160 at 164.663 kb on + strand, within Dsui_0160 at 164.671 kb on - strand, within Dsui_0160 at 164.671 kb on - strand, within Dsui_0160 at 164.676 kb on - strand, within Dsui_0160
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cisplatin 0.0008 mg/ml remove 162,475 + Dsui_0156 0.83 +0.5 162,485 - Dsui_0156 0.85 -1.1 162,510 + Dsui_0156 0.89 -2.8 162,518 - +0.5 162,528 - -0.5 162,528 - -1.5 162,534 - -1.1 162,543 - +0.5 162,593 - -1.1 162,612 - +0.5 162,748 + Dsui_0157 0.21 +0.5 162,774 - Dsui_0157 0.24 +0.5 162,810 - Dsui_0157 0.29 -1.5 162,827 + Dsui_0157 0.31 -1.1 162,831 - Dsui_0157 0.31 +0.5 162,847 + Dsui_0157 0.33 +0.5 162,847 + Dsui_0157 0.33 -1.1 162,881 - Dsui_0157 0.38 -0.5 162,914 - Dsui_0157 0.42 -1.5 162,934 + Dsui_0157 0.44 +0.5 162,936 - Dsui_0157 0.44 -2.3 162,956 - Dsui_0157 0.47 -2.1 162,995 - Dsui_0157 0.52 -2.1 163,020 + Dsui_0157 0.55 +0.5 163,020 + Dsui_0157 0.55 -0.5 163,022 + Dsui_0157 0.55 -1.1 163,046 - Dsui_0157 0.58 -0.5 163,073 - Dsui_0157 0.62 -1.5 163,081 - Dsui_0157 0.63 -1.3 163,084 + Dsui_0157 0.63 +0.5 163,084 + Dsui_0157 0.63 -2.7 163,084 + Dsui_0157 0.63 -1.1 163,092 - Dsui_0157 0.64 -1.8 163,099 + Dsui_0157 0.65 +0.5 163,146 + Dsui_0157 0.71 -1.5 163,153 - Dsui_0157 0.72 -1.5 163,212 + Dsui_0157 0.79 -0.5 163,274 - Dsui_0157 0.87 -1.1 163,316 + +0.5 163,319 - +0.5 163,322 - -0.1 163,324 - -2.7 163,330 - -2.1 163,341 + -1.8 163,341 + -1.8 163,347 + -0.5 163,347 + +1.1 163,347 + -1.1 163,349 - -0.5 163,355 - -2.1 163,355 - -1.1 163,355 - -1.5 163,385 + -2.1 163,393 - +1.1 163,393 - -0.5 163,393 - -1.8 163,399 + -1.8 163,410 + +0.5 163,418 + +0.5 163,456 + +0.5 163,462 - Dsui_0158 0.10 +0.5 163,466 + Dsui_0158 0.12 -0.5 163,466 + Dsui_0158 0.12 -1.5 163,466 + Dsui_0158 0.12 +0.5 163,466 + Dsui_0158 0.12 -1.1 163,466 + Dsui_0158 0.12 -2.3 163,466 + Dsui_0158 0.12 -0.5 163,472 + Dsui_0158 0.14 +0.5 163,474 - Dsui_0158 0.15 -0.5 163,474 - Dsui_0158 0.15 -0.5 163,474 - Dsui_0158 0.15 +0.5 163,474 - Dsui_0158 0.15 -2.1 163,474 - Dsui_0158 0.15 +0.5 163,474 - Dsui_0158 0.15 -1.1 163,474 - Dsui_0158 0.15 +0.9 163,474 - Dsui_0158 0.15 -0.5 163,474 - Dsui_0158 0.15 +0.5 163,474 - Dsui_0158 0.15 +0.5 163,480 - Dsui_0158 0.17 -1.1 163,524 + Dsui_0158 0.36 -1.5 163,532 - Dsui_0158 0.39 +0.5 163,551 + Dsui_0158 0.47 -2.3 163,551 - Dsui_0158 0.47 -1.3 163,560 + Dsui_0158 0.51 -0.5 163,581 + Dsui_0158 0.60 -1.5 163,589 - Dsui_0158 0.63 -1.1 163,592 - Dsui_0158 0.64 -0.5 163,598 - Dsui_0158 0.67 -0.5 163,656 - -2.5 163,678 + -1.5 163,712 - +0.5 163,730 + -0.5 163,744 - -1.8 163,764 - +0.5 163,775 + +0.5 163,775 + -1.1 163,775 + -0.5 163,783 - -1.1 163,783 - -0.5 163,783 - +0.5 163,805 - -2.5 163,810 - +0.5 163,828 - -0.5 163,831 + -1.5 163,831 + +0.5 163,831 + -1.5 163,831 + -0.5 163,831 + -0.5 163,831 + +0.5 163,831 + -1.5 163,831 + -1.8 163,832 + +0.5 163,832 + -1.1 163,839 - -1.3 163,839 - -3.2 163,839 - +0.9 163,839 - +0.5 163,839 - +0.5 163,867 + +0.5 163,873 - -0.9 163,873 - +0.5 163,878 - -1.1 163,884 - +0.5 163,913 - +0.5 163,925 - -2.8 163,957 - -0.5 163,970 + -0.7 163,978 - +0.5 163,978 - +0.5 163,980 + -2.1 164,009 - +0.5 164,010 + +0.5 164,025 + -1.1 164,025 + -0.2 164,051 + -1.8 164,059 - -2.3 164,068 + +0.5 164,110 + +0.5 164,124 + +0.5 164,128 - -2.3 164,138 + +0.5 164,149 + +0.5 164,149 + +0.5 164,149 + -1.1 164,149 + -0.5 164,149 + -2.3 164,157 - -2.5 164,157 - -1.1 164,157 - +1.5 164,157 - +0.5 164,157 - -2.1 164,209 + +0.5 164,240 + -1.1 164,251 - -1.1 164,251 - +0.5 164,251 - +0.5 164,260 + +0.5 164,263 - -2.1 164,263 - +0.5 164,272 + +0.5 164,292 + -0.5 164,328 - -0.5 164,328 - -2.5 164,333 - -1.8 164,346 - +0.5 164,360 - -1.1 164,388 + +0.5 164,396 - -1.8 164,417 - +0.5 164,425 + -0.5 164,441 + -1.1 164,463 + +0.5 164,474 + -0.5 164,474 + +1.5 164,475 - +0.5 164,482 - -1.1 164,482 - +0.7 164,482 - -1.0 164,493 + -1.5 164,496 - +0.5 164,500 + -0.5 164,501 - +2.1 164,501 - -0.5 164,501 - -1.1 164,507 + -2.3 164,507 - -1.5 164,515 - -0.4 164,526 + +0.5 164,534 - -0.5 164,556 + -0.5 164,559 - +0.5 164,593 - -1.1 164,600 - Dsui_0160 0.10 -2.3 164,604 - Dsui_0160 0.11 +0.5 164,607 - Dsui_0160 0.11 +0.5 164,610 + Dsui_0160 0.12 +0.5 164,619 - Dsui_0160 0.13 +0.5 164,619 - Dsui_0160 0.13 +0.5 164,661 - Dsui_0160 0.18 -1.3 164,661 - Dsui_0160 0.18 -0.5 164,663 + Dsui_0160 0.19 +0.5 164,671 - Dsui_0160 0.20 -3.8 164,671 - Dsui_0160 0.20 -1.3 164,676 - Dsui_0160 0.20 +0.5
Or see this region's nucleotide sequence